PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G174800.1.p | ||||||||
Common Name | GLYMA_02G174800, LOC100799133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 38404.1 Da PI: 6.3221 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.3e-09 | 198 | 245 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L k +++++sLq Glyma.02G174800.1.p 198 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 245 8*************************9....899999*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.41E-9 | 192 | 249 | No hit | No description |
SuperFamily | SSF47459 | 9.29E-15 | 192 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.462 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 195 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 198 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-8 | 200 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEQTTLEAIQ FNEEIQGLMA APAPETANSF TALLELPPTQ AVELFHSPER AGKPPRHSPK 60 SYPLTSFAAS ASAPATATAT ANANLTFPSN AALIDRAARF SVFAGQSSNS NSPEVKRELP 120 ETDSNPSSTH GGGGGGSVSD LAVENQNLKT AKRKEREKKV KASSKKSKSV AAADEISGDG 180 EKLPYVHVRV RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDKIINH 240 VQSLQNEVEI LSMKLAAVNP VIDFNLDSLL ATEGVTPMDC NFPPTVAPVM WPEIPQNGNR 300 QQYQQPWPFD ALHQPLWGRE EDNTNFMTPE NSLLSYDSSA NSVSLHSNQL KMEL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55832 | 0.0 | flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G174800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518064.1 | 0.0 | transcription factor bHLH48 | ||||
TrEMBL | K7K948 | 0.0 | K7K948_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G29518.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G174800.1.p |
Entrez Gene | 100799133 |