PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G162200.1.p
Common NameGLYMA_02G162200, LOC102663144
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 245aa    MW: 27064.7 Da    PI: 9.5013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G162200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0585107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k Fs++  L  H++ H
  Glyma.02G162200.1.p  85 FSCKFCDKKFSSSQALGGHQNAH 107
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-581111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.62E-782112No hitNo description
PROSITE profilePS5015711.61485112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSDELLVGGV ESRKLKRKIE EASSTDVIDS EFVLSLSLGN NKMVGESSSN FLCKSLKSHQ  60
ESPGFASKLV ENINNHVIMP KQRQFSCKFC DKKFSSSQAL GGHQNAHKRE RVISRMDKDM  120
ETFGLGAHMC SYSSIPHHHP FHGPTPLYYG ANMHPMAHMS AMPWPNFVLD FGNQGLRTTS  180
ISGKRFGMAN PWGIAAETPP NVHRRDVGFN VEHNQVPSLD IAHRAAMARS GLSGLLGNQY  240
TRNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G162200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575908.10.0zinc finger protein 4
RefseqXP_028186984.10.0zinc finger protein 4-like
TrEMBLA0A0B2PZ590.0A0A0B2PZ59_GLYSO; Zinc finger protein 3
TrEMBLK7K8R90.0K7K8R9_SOYBN; Uncharacterized protein
STRINGGLYMA02G22110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-07C2H2 family protein