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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G162200.1.p | ||||||||
Common Name | GLYMA_02G162200, LOC102663144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 27064.7 Da PI: 9.5013 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H Glyma.02G162200.1.p 85 FSCKFCDKKFSSSQALGGHQNAH 107 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 81 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.62E-7 | 82 | 112 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSDELLVGGV ESRKLKRKIE EASSTDVIDS EFVLSLSLGN NKMVGESSSN FLCKSLKSHQ 60 ESPGFASKLV ENINNHVIMP KQRQFSCKFC DKKFSSSQAL GGHQNAHKRE RVISRMDKDM 120 ETFGLGAHMC SYSSIPHHHP FHGPTPLYYG ANMHPMAHMS AMPWPNFVLD FGNQGLRTTS 180 ISGKRFGMAN PWGIAAETPP NVHRRDVGFN VEHNQVPSLD IAHRAAMARS GLSGLLGNQY 240 TRNQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G162200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575908.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_028186984.1 | 0.0 | zinc finger protein 4-like | ||||
TrEMBL | A0A0B2PZ59 | 0.0 | A0A0B2PZ59_GLYSO; Zinc finger protein 3 | ||||
TrEMBL | K7K8R9 | 0.0 | K7K8R9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G22110.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14229 | 12 | 17 |
Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 9e-07 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G162200.1.p |
Entrez Gene | 102663144 |