PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G152900.1.p
Common NameGLYMA_02G152900, LOC100796874
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 341aa    MW: 38259.9 Da    PI: 7.6238
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G152900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.8e-06951238
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                         ++r+C+ +++  + l+C+ ++  lC  C  + H         H+
  Glyma.02G152900.1.p  9 KQRTCDYCGSFTALLYCRADSAKLCFFCDRKVH-FpnqlfskHK 51
                         789*******99*****************9999.3344555565 PP
2CCT62.11.7e-21294337144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ allRY+eK+k+R+++K+irYesRK++AesR R+KGrFv+ +
  Glyma.02G152900.1.p 294 RDSALLRYREKKKSRRYDKHIRYESRKVRAESRMRIKGRFVRDE 337
                          899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296855IPR000315B-box-type zinc finger
SMARTSM003363.9E-11855IPR000315B-box-type zinc finger
CDDcd000213.99E-61155No hitNo description
PROSITE profilePS5011911.0495197IPR000315B-box-type zinc finger
CDDcd000212.80E-45597No hitNo description
SMARTSM003360.245697IPR000315B-box-type zinc finger
PfamPF062036.2E-16294336IPR010402CCT domain
PROSITE profilePS5101715.021294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMNGSPNSKQ RTCDYCGSFT ALLYCRADSA KLCFFCDRKV HFPNQLFSKH KRAQLCDACG  60
DSPASVLCSA ENSVLCQNCD CGKQKHLVSE AHQRRPLEGF SGCPSVTELL TILGLSEKSL  120
LSNEGTSQID DDLSDLHVWS APSINGLEDL ITTTASSQKK RKGACGRHKE EILSQLRELI  180
KLEPDLIHAE RQGQFGNLPT DFERDVEANI FPSYEVGVFC WHGESSDPRN QIVPSDTSPL  240
RDYGDIVSAE DGSFTITVTH ANFNNQGKPS NSFNAENLSP TPKATPYELT SHERDSALLR  300
YREKKKSRRY DKHIRYESRK VRAESRMRIK GRFVRDETQK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.193948e-47leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G152900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575103.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLK7K8I70.0K7K8I7_SOYBN; Uncharacterized protein
STRINGGLYMA02G17181.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-70B-box type zinc finger protein with CCT domain