PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G148500.3.p
Common NameGLYMA_02G148500, LOC100788949
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 321aa    MW: 35165.4 Da    PI: 5.5566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G148500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09184232255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++++   Er+RR+ri + +  L ellP++        s a +L   ++Y+k+Lq
  Glyma.02G148500.3.p 184 KQKARVTERQRRQRIADNLKALHELLPNP-----AEGSQAYVLDDIIDYVKYLQ 232
                          6788999*********************8.....589****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-9181236No hitNo description
Gene3DG3DSA:4.10.280.102.5E-11182241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.989182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6184232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-5188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDQSNQENP GRTTSGVSHH QFPIPKVAIA ASSGRNGSHR TCLPKLTHHN YVEYLSESST  60
YNLPKTSTEF MMKSSYLPVG NISDGYGVSG TDRNFFYSDD PGKACSFKTI GSSSNDLDIS  120
KVGFWRADEG IKVETESSQN LVYAESHASW TSDSVGDKHN ASHDPMFMVG APTLLPKPGC  180
SSSKQKARVT ERQRRQRIAD NLKALHELLP NPAEGSQAYV LDDIIDYVKY LQLQIKEQSG  240
SRLLQADSTA IPLVFHEGYG HYINQKMLNE PLEEIMGKLV EDDSAAAVQL LESKGLFLLP  300
MALVDELSEA VQMFGGSALV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G148500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520214.10.0transcription factor bHLH7 isoform X3
TrEMBLK7K8F00.0K7K8F0_SOYBN; Uncharacterized protein
STRINGGLYMA02G16745.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-22LJRHL1-like 2