PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G139700.1.p

Common Name

GLYMA_02G139700, Glyma02g15780.1

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 272aa MW: 29611.7 Da PI: 7.3973

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G139700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.4e-12	74	120	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P+ +K++Ka+ L +++ +k+L Glyma.02G139700.1.p 74 KNHSEAERRRRERINGHLATLRGLVPST-----EKMDKATLLAEVISQVKEL 120 58***********************8.....8********99988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.44	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	74	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-13	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-13	75	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-12	77	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.21E-5	160	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVYSFYDKTS SSSGSDISGL FNPTLHNLGA CNDLSSSPHS LVFESDKGEL VKCLAAAKVG 60 KSEICEAKAL AALKNHSEAE RRRRERINGH LATLRGLVPS TEKMDKATLL AEVISQVKEL 120 KKNAAEVSKG FLIPKDADEV KVEPYNDHEG GEGSMSYSAT ICCDFRPEIL SDLRQTLDSL 180 PLHLVKAEIS TLAGRMKNVF VFTCCKENIN NIDFEKCQAL ASTVHQALCS VMEKASASLD 240 FSPRTSHASK RRRLCFIETS NSTCNHGSCL C*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	ERRRRE
2	249	253	KRRRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.752	0.0	hypocotyl\| meristem\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G139700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031099	0.0	KT031099.1 Glycine max clone HN_CCL_46 bHLH transcription factor (Glyma02g15780.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304560.2	0.0	transcription factor bHLH30-like
TrEMBL	I1JF19	0.0	I1JF19_SOYBN; BHLH transcription factor
STRING	GLYMA02G15780.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8986	31	43
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G139700.1.p

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]