PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G137400.3.p
Common NameGLYMA_02G137400, LOC100527660
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 166aa    MW: 18248.9 Da    PI: 8.9214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G137400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-0556951054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         + R ++i +++  L++l+ +      +K + +++L++A+eYI  L
  Glyma.02G137400.3.p 56 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 95
                         789999************999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-84599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6554695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1048101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-55699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MIASSFCNAD SMFSREEGID VRKMMEHKRR PCSVDQSSYT SIASKRQKAD LSISTKERKE  60
KIGERIVALQ QLVSPYGKTD TSSVLKEAME YIGFLHKQLL SAPYLESSPA AKMQGVEPCS  120
LRSRGLCLVP VSVTIGVAES NGADIWAPIK TTTSPKFEKD VSQFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.232010.0leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G137400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310980.0KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574374.11e-120uncharacterized LOC100527660 isoform X1
RefseqXP_028205475.11e-120transcription factor bHLH153-like isoform X2
SwissprotQ7XJU21e-56BH153_ARATH; Transcription factor bHLH153
TrEMBLI1JEZ71e-119I1JEZ7_SOYBN; Uncharacterized protein
STRINGGLYMA02G15520.11e-118(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-59bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]