PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 216aa MW: 23840.5 Da PI: 4.9258

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G132500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.9	7e-20	87	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrd r +r++lg+f tae+Aa+a+++a +l+g Glyma.02G132500.1.p 87 KKYRGVRQRP-SGKWAAEIRDrH-----RsARVWLGTFETAEDAARAYDKASFELRG 137 59******.7*****44.....35***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.15E-32	87	145	No hit	No description
Pfam	PF00847	2.2E-14	88	137	IPR001471	AP2/ERF domain
SMART	SM00380	2.8E-35	88	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.143	88	145	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-31	88	146	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-21	88	146	IPR016177	DNA-binding domain
PRINTS	PR00367	2.0E-10	89	100	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-10	111	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSSSSSSFFP AHITTDQEFS LIVAALTNVV SGSTSSSSVP EFRFPHSSPP LSAASLMPPP 60 LPSIHTCREC NIAGCLGCNF FPEEQRKKYR GVRQRPSGKW AAEIRDRHRS ARVWLGTFET 120 AEDAARAYDK ASFELRGPRA KLNFPLVDES LTLQPEMAAT EEQINNEDNL NQGMGMDSHE 180 FWDRINEADF HPFMMMMDFT GDSSDSAATG YTLSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-23	87	146	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.6754	6e-59	flower\| meristem\| root\| seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G132500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518839.2	1e-159	ethylene-responsive transcription factor ERF109
Refseq	XP_028186364.1	1e-159	ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	2e-28	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A445LNM7	1e-159	A0A445LNM7_GLYSO; Ethylene-responsive transcription factor ERF109
TrEMBL	I1JEU3	1e-159	I1JEU3_SOYBN; Uncharacterized protein
STRING	GLYMA02G14940.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	7e-27	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G132500.1.p
Entrez Gene	100794381

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]