PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 314aa MW: 35306.4 Da PI: 6.037

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G124300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d ++++G +W++ ++ g++R++k+c++rw +yl Glyma.02G124300.1.p 14 KGPWTPEEDQKLIDHIQKHGHASWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.9	2.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++d+++ lG++ W++Ia++++ gRt++++k++w+++l Glyma.02G124300.1.p 67 RGKFSQEEEQTILDLHAILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.168	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.17E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.113	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-17	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	9.97E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGRSPCCDEI GLKKGPWTPE EDQKLIDHIQ KHGHASWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILD LHAILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHQPRI DDIFTGLSHL IALANLKELL DQPLEQNLAR LQELAKLQCL QQHLLQPQAS 180 LNIDADPNYT INSTINSTFM MNKGTINVSN DQFENIIMSS NCTMPFSDMP ELKTPPSCSY 240 EAPLSNKDMI QLSQGEIYPD SPWLLSCSST TPSSPSSLVA PPVTEVSLST NVEDNCTIWP 300 ELLLEDPLFK MIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-30	12	116	5	108	B-MYB
1h8a_C	2e-30	12	116	25	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269\|PubMed:24902892}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G124300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-69	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520138.1	0.0	transcription factor MYB92
Refseq	XP_028204092.1	0.0	transcription factor MYB92-like
Swissprot	Q9SBF3	3e-98	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A445LN40	0.0	A0A445LN40_GLYSO; Transcription factor MYB92
TrEMBL	I1JEL4	0.0	I1JEL4_SOYBN; Uncharacterized protein
STRING	GLYMA02G13770.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-93	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Glyma.02G124300.1.p
Entrez Gene	100781670

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]