PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G123400.2.p | ||||||||
Common Name | GLYMA_02G123400, LOC100816055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 36740.6 Da PI: 7.2739 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.1 | 5e-16 | 46 | 95 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Glyma.02G123400.2.p 46 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 95 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-18 | 42 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-23 | 43 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.044 | 44 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.81E-15 | 46 | 99 | No hit | No description |
Pfam | PF00010 | 2.3E-13 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-12 | 50 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MRAGKGSQEE DEYEEEEFGS SKKQGTSSAP NTNKDGKAID KASAIRSKHS VTEQRRRSKI 60 NERFQILRDL IPHSDQKRDT ASFLLEVIEY VQYLQEKVQK YEGSYQGWGQ EPSKLMPWRN 120 SHWRVQSFAG QPTAVKNGLG PVSPFPGKFD ESNVSISPTM LNGSQNTIDP DQSRDIVNKT 180 AERQPDLVSK GIPLPLAMHA NMSVPVRSDG VLAHPLQGTV SNAQSTECPT TSEPQNQQDE 240 LSVEGGTISI SSAYSQGLLN NLTQALQSAG LDLSQASISV QINLGKRANK GLNCGTSSLK 300 HHDNPSSNNQ TIAHFRDAGS GEDSDQAQKR MKTYK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32601 | 0.0 | flower| hypocotyl| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G123400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093538 | 0.0 | BT093538.1 Soybean clone JCVI-FLGm-24O13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574463.1 | 0.0 | uncharacterized protein LOC100816055 isoform X1 | ||||
Refseq | XP_028204027.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
Swissprot | Q9CAA4 | 1e-118 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A445LNY3 | 0.0 | A0A445LNY3_GLYSO; Transcription factor BIM2 isoform B | ||||
TrEMBL | I1JEK7 | 0.0 | I1JEK7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G13670.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-115 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G123400.2.p |
Entrez Gene | 100816055 |
Publications ? help Back to Top | |||
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