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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.02G121600.1.p |
Common Name | GLYMA_02G121600, LOC100811588 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MIKC_MADS |
Protein Properties |
Length: 244aa MW: 28176.1 Da PI: 8.5651 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.02G121600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+ey++
Glyma.02G121600.1.p 9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYAT 59
79***********************************************86 PP
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2 | K-box | 107.2 | 1.8e-35 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90
y++++ ++++++++e+++ e+++Lk++i+ Lqr++Rh++GedL s+slkeLq+LeqqL +++k+iR+++n+l+ e+i+elqkkek++qee
Glyma.02G121600.1.p 75 YAERQLVANDSETQENWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLVTGIKNIRTRRNDLMSESISELQKKEKRIQEE 164
5677888889999***************************************************************************** PP
K-box 91 nkaLrkklee 100
n++L kk++e
Glyma.02G121600.1.p 165 NNTLAKKIKE 174
*******987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-33 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.96E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 3.0E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.7E-30 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.06 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIIFSH KGKLFEYATD 60 SCMEKILERH ERYAYAERQL VANDSETQEN WTIEYTRLKA KIDLLQRNHR HYMGEDLASM 120 SLKELQSLEQ QLVTGIKNIR TRRNDLMSES ISELQKKEKR IQEENNTLAK KIKEKEQAVA 180 QQAAQWEQPN YRVDTSFMPQ QQPLPTSLNI CGNNYCQEAA PELGRNGLDL TLEPLYSCNL 240 GCF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |