PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G115300.1.p
Common NameGLYMA_02G115300, LOC100807311
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 502aa    MW: 56290.5 Da    PI: 8.8491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G115300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036444466123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C+k F++   L  H r+H
  Glyma.02G115300.1.p 444 HECPICNKIFRSGQALGGHKRSH 466
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-41236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-61437IPR007087Zinc finger, C2H2
SMARTSM003550.141436IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1181441IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM003550.21111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473111138IPR007087Zinc finger, C2H2
SuperFamilySSF576673.26E-8112133No hitNo description
PfamPF139125.2E-7113135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576673.26E-8439466No hitNo description
PfamPF139122.2E-11443466IPR007087Zinc finger, C2H2
SMARTSM003550.018444466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702444466IPR007087Zinc finger, C2H2
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MMMSYQSMEE TRKFVCKYCS KRFPCGKSLG GHIRTHMMSS EHHHSALANN EERNNNNNNA  60
ANAMFKFDGG RKKKRDLGSE ENGNNNNYGL RENPKKTTRF VHSNATLQLD KFCKECGKGF  120
PSLKALCGHM ACHSEKDKGG FATEKQKLVM DSQSDTETSS APRRSKRMKS KTLSSSNNNN  180
NNQPQSSSVS EVEQEQEELA RCLMMLSKDS SYKGRFALLT ESSDNNSVVI TKSPSLETKV  240
TTMMNVYGKN SMERKLELEQ HKDLKFKSVE VGYDSDNSDS GYFRYGPKSD ESNDEFFRNE  300
VKSSKVGYLN GFDQEYDVVE SRKVLSRGRS RSSEFKKFVL EDWESYDRED GDVAARKFGS  360
KKFKKSNYDD DSLGQNLGGV STRKYECLTS ERYNGCSDDS AYESDENSTD TDSYPAPKAH  420
HSNRNNLSGN KGKKKLKSKK SKAHECPICN KIFRSGQALG GHKRSHFIGG SEENTLVIRP  480
SAPPAAVPCL IDLNLPAPVD E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G115300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-81AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520110.20.0putative uncharacterized protein DDB_G0287457
RefseqXP_028203157.10.0putative uncharacterized protein DDB_G0287457
TrEMBLA0A445LMJ70.0A0A445LMJ7_GLYSO; Uncharacterized protein
TrEMBLK7K7S50.0K7K7S5_SOYBN; Uncharacterized protein
STRINGGLYMA02G12840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-73C2H2-like zinc finger protein