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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.02G110000.1.p |
| Common Name | GLYMA_02G110000, LOC100790887 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MYB |
| Protein Properties |
Length: 303aa MW: 33882.6 Da PI: 7.1379 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.02G110000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 63.7 | 3.7e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv +v+++G+g+W++++++ g+ R++k+c++rw +yl
Glyma.02G110000.1.p 14 KGPWTPEEDKKLVAYVEEHGPGNWRSVPAKAGLERCGKSCRLRWINYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ eEd +++++++lG++ W+ Ia++++ +Rt++++k++w++
Glyma.02G110000.1.p 67 RGNFSMEEDHTIIQLHALLGNK-WSIIAAHLP-NRTDNEIKNYWNT 110
89********************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MGRMPCCEKV GLKKGPWTPE EDKKLVAYVE EHGPGNWRSV PAKAGLERCG KSCRLRWINY 60
LKPDIKRGNF SMEEDHTIIQ LHALLGNKWS IIAAHLPNRT DNEIKNYWNT NIKKRLIRMG 120
LDPITHKPIK SNSFEAYDEF KDTTNMGHVA QWESARLEAE ARGSILQVGS GSSNLPRLNL 180
SKIPTQPCSS SYSISNEHMT AYNMYALVLA TNYDLQSSVS TLSVPKLPEV CTIIGKFANA 240
ESLLSYKNDD NVVEISSQIQ KVVEGSVSNL QDDDIMMAVE AFRTAKCESI QELFNESAVE 300
KV*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 4e-29 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-28 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-28 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 8e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 4e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 4e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
