PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 280aa MW: 32055.4 Da PI: 9.2396

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G109800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.4	1.6e-54	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+r++ky++g r+nrat sgyWkatg+dk Glyma.02G109800.1.p 9 LPPGFRFHPTDEELIVYYLCNQATSRPCPA-SIIPEVDIYKFDPWELPEKTDFGEKEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDK 97 79**************************.89***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s ++++vg+kk Lvfykg+ pkg ktdW+mheyrl Glyma.02G109800.1.p 98 AIYS-GSKHVGVKKALVFYKGKPPKGLKTDWIMHEYRL 134 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-66	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	9	161	IPR003441	NAC domain
Pfam	PF02365	1.5E-26	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MENRTSSVLP PGFRFHPTDE ELIVYYLCNQ ATSRPCPASI IPEVDIYKFD PWELPEKTDF 60 GEKEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKAIY SGSKHVGVKK ALVFYKGKPP 120 KGLKTDWIMH EYRLIGSRRQ ANRQVGSMRL DDWVLCRIYK KKNIGKSMEA KEEYPIAQIN 180 LTPANNDSEQ EMVKFPRTSS LTHLLEMDYL GPISHILSDA TYNSTFDFQI NTANGGIDPF 240 VKPQPVEIPY AADSGKYQVK QNSTINPTIF VNQVYYQRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-72	5	163	13	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-72	5	163	13	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-72	5	163	13	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-72	5	163	13	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-72	5	163	16	170	NAC domain-containing protein 19
3swm_B	1e-72	5	163	16	170	NAC domain-containing protein 19
3swm_C	1e-72	5	163	16	170	NAC domain-containing protein 19
3swm_D	1e-72	5	163	16	170	NAC domain-containing protein 19
3swp_A	1e-72	5	163	16	170	NAC domain-containing protein 19
3swp_B	1e-72	5	163	16	170	NAC domain-containing protein 19
3swp_C	1e-72	5	163	16	170	NAC domain-containing protein 19
3swp_D	1e-72	5	163	16	170	NAC domain-containing protein 19
4dul_A	1e-72	5	163	13	167	NAC domain-containing protein 19
4dul_B	1e-72	5	163	13	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26628	0.0	cotyledon\| flower\| hypocotyl\| leaf\| root\| stem\| vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G109800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661923	0.0	EU661923.1 Glycine max NAC domain protein (NAC26) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028202582.1	0.0	NAC domain-containing protein 2-like
Swissprot	K4BNG7	1e-115	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A0B2Q3A2	0.0	A0A0B2Q3A2_GLYSO; NAC domain-containing protein 29
TrEMBL	A0A0R4J2P4	0.0	A0A0R4J2P4_SOYBN; Uncharacterized protein
STRING	GLYMA02G12220.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-115	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Glyma.02G109800.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]