PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G108500.2.p | ||||||||
Common Name | GLYMA_02G108500, LOC100787178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 351aa MW: 39088.1 Da PI: 5.9562 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.9 | 4.5e-28 | 20 | 73 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF+ea +qLGG++ +tPk+++++m+++gLtl+h+kSHLQk+Rl Glyma.02G108500.2.p 20 KPRLKWTPELHRRFIEATNQLGGED-TTPKSLMRVMGIPGLTLYHLKSHLQKFRL 73 79*******************9988.9***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.085 | 17 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 18 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-16 | 19 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-20 | 20 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.4E-7 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-21 | 117 | 163 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDPQNMQNQT MHFVLSTDSK PRLKWTPELH RRFIEATNQL GGEDTTPKSL MRVMGIPGLT 60 LYHLKSHLQK FRLGKSQQLE TCSDNKQEDY IETKSSSDGH CSREISLGAQ NQITENMQIA 120 QALQMQMEVQ RKLYEQIEVQ KHLQLRIEAQ GKYLQSVLKK AQEALAGYNS SPVGIELTKA 180 ELSQLVTIIN DACPSSPISE LTETRGLSLS CGERKRDRGT MCSLESSLTS SESSGRKEEK 240 QPMEEIVEFK SSNNVSFELP LMEIHTEDKA SNGGLSSNEG SGRKRSLAAT ESDDGSCVVE 300 QPCGKRCGNK LLRKVKLSEM LDLNSQCQSD MDSTGSKTLD LNCSLNFWEP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-17 | 20 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-17 | 20 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-17 | 20 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-17 | 20 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-17 | 20 | 75 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39397 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G108500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235379 | 0.0 | AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621920.1 | 0.0 | myb family transcription factor PHL8 isoform X2 | ||||
Refseq | XP_028202447.1 | 0.0 | myb family transcription factor PHL8-like isoform X2 | ||||
Swissprot | F4I274 | 6e-74 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0R0L2K5 | 0.0 | A0A0R0L2K5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G12070.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 7e-74 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G108500.2.p |
Entrez Gene | 100787178 |
Publications ? help Back to Top | |||
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