PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G107300.1.p
Common NameGLYMA_02G107300, LOC100785050
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 292aa    MW: 32369.5 Da    PI: 9.7346
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G107300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.85.3e-3343101360
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                          +v YkeClkNhAas+Ggha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr+ ++e
  Glyma.02G107300.1.p  43 TVFYKECLKNHAASIGGHALDGCGEFMPSSSSNpNEPRSLTCAACGCHRNFHRRRDTQE 101
                          789**************************9999999******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-284497IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-314696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-174696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.5764697IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.59E-18182254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28183256IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-26195252IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDLTKDTNSQ TPPQPNTTTN GSLKHHHHHP TTVSPPQQPP STTVFYKECL KNHAASIGGH  60
ALDGCGEFMP SSSSNPNEPR SLTCAACGCH RNFHRRRDTQ ENHHRSNSRP NFISFYHSPP  120
LSRHGPGLSP TPSPMSSPSP SPPPISHHFP PSSHHFQGPI PAHGLLGLGN ENHHHHMSFN  180
FNSSSHSTQG NTSGKKRHRT KFSHEQKQKM YNFAEKLGWR MQKAEEGLVQ DFCNEIGVSR  240
GVFKVWMHNN KNTSARNKSL EPGEKINGTG THSNNNNNHP YNTNSTNDDT H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-191962531875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.560570.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G107300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353790.0AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520078.10.0zinc-finger homeodomain protein 11
TrEMBLI1JE450.0I1JE45_SOYBN; Uncharacterized protein
STRINGGLYMA02G11950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-43zinc finger homeodomain 1