PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G107000.2.p
Common NameGLYMA_02G107000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 385aa    MW: 43096.6 Da    PI: 7.0204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G107000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.51e-30108752128
                  NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Glyma.02G107000.2.p  10 TTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 87 
                          45789**************************************956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.6191118IPR003441NAC domain
SuperFamilySSF1019414.97E-348118IPR003441NAC domain
PfamPF023651.1E-121587IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MILMCVELAT TGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGSKCIG  60
LKKSLVFYKG RAAKGVKTDW MMHEFRLPSL TDSLSPKYID KITIPANESW AICRIFKKTN  120
ATAQRALSHS WVSSLPETRT SDHHILTKDQ DNTTQFCSDN MSMTKKTTLA SQYCSNNYND  180
SQPLTTNSST LCPLDVASCK SIINPLLYKA FDHFPISNED LSTSLLFSSP PFETSETNPK  240
STIMDVSSML LNMSSSVLGD FNKTTSEDTN TNAASNFGVL QEHCSGYPIP FLRENMQTTF  300
GNQQQQYCDN IYALVKGPNV NVPRVDDPEL ELETVVQRSI GFPLSVTMPL NIGDAWKSNN  360
LLWDTSSFPC DVPSSYYSTT KCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-32912566171NO APICAL MERISTEM PROTEIN
1ut4_B2e-32912566171NO APICAL MERISTEM PROTEIN
1ut7_A2e-32912566171NO APICAL MERISTEM PROTEIN
1ut7_B2e-32912566171NO APICAL MERISTEM PROTEIN
3swm_A2e-32912569174NAC domain-containing protein 19
3swm_B2e-32912569174NAC domain-containing protein 19
3swm_C2e-32912569174NAC domain-containing protein 19
3swm_D2e-32912569174NAC domain-containing protein 19
3swp_A2e-32912569174NAC domain-containing protein 19
3swp_B2e-32912569174NAC domain-containing protein 19
3swp_C2e-32912569174NAC domain-containing protein 19
3swp_D2e-32912569174NAC domain-containing protein 19
4dul_A2e-32912566171NAC domain-containing protein 19
4dul_B2e-32912566171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.609730.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G107000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520076.10.0protein FEZ
RefseqXP_028202281.10.0protein FEZ-like
SwissprotQ9ZVH02e-69FEZ_ARATH; Protein FEZ
TrEMBLI1JE420.0I1JE42_SOYBN; Uncharacterized protein
STRINGGLYMA02G11900.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-70NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]