PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G107000.1.p
Common NameGLYMA_02G107000, LOC100783995
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 443aa    MW: 50123.5 Da    PI: 6.6154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G107000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-52181451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Glyma.02G107000.1.p  18 MLPGFRFHPTDEELVGFYLKRKIQQRPLTI-ELIKQLDIYKFDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 106
                          579*************************99.89***************8888999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Glyma.02G107000.1.p 107 PIYSSeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 145
                          ****956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5716176IPR003441NAC domain
PROSITE profilePS5100557.24418176IPR003441NAC domain
PfamPF023651.6E-2520145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MMEERNNNDA AEKLDEVMLP GFRFHPTDEE LVGFYLKRKI QQRPLTIELI KQLDIYKFDP  60
WDLPKLATTG EKEWYFYCPR DRKYRNSARP NRVTGAGFWK ATGTDRPIYS SEGSKCIGLK  120
KSLVFYKGRA AKGVKTDWMM HEFRLPSLTD SLSPKYIDKI TIPANESWAI CRIFKKTNAT  180
AQRALSHSWV SSLPETRTSD HHILTKDQDN TTQFCSDNMS MTKKTTLASQ YCSNNYNDSQ  240
PLTTNSSTLC PLDVASCKSI INPLLYKAFD HFPISNEDLS TSLLFSSPPF ETSETNPKST  300
IMDVSSMLLN MSSSVLGDFN KTTSEDTNTN AASNFGVLQE HCSGYPIPFL RENMQTTFGN  360
QQQQYCDNIY ALVKGPNVNV PRVDDPELEL ETVVQRSIGF PLSVTMPLNI GDAWKSNNLL  420
WDTSSFPCDV PSSYYSTTKC YT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5321781170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.609730.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G107000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619280.0EU661928.1 Glycine max NAC domain protein (NAC36) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520076.10.0protein FEZ
RefseqXP_028202281.10.0protein FEZ-like
SwissprotQ9ZVH01e-109FEZ_ARATH; Protein FEZ
TrEMBLA0A0B2PXE00.0A0A0B2PXE0_GLYSO; Protein FEZ
TrEMBLI1JE410.0I1JE41_SOYBN; Uncharacterized protein
STRINGGLYMA02G11900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-110NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]