PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G100200.1.p | ||||||||
Common Name | GLYMA_02G100200, LOC100803236 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 437aa MW: 48534.1 Da PI: 4.9759 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.5 | 1.4e-32 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....t 78 lp+G++F+P+d+e++++ L+k g++ ++++ + evd i++++P++Lp v+++ + +fF+++ k+y+tg+rk+r+ Glyma.02G100200.1.p 58 LPKGVKFDPSDQEIIWHLLAKVGVGDSkshpfIDEFITTLEVDdgICYTHPQNLP-GVRQDGSASHFFHRAIKAYNTGTRKRRKilgqdF 146 799************888777644444566554443444444345**********.667788999******************7455554 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y + r k+ekt+Wvmh+y+l Glyma.02G100200.1.p 147 GDVRWHKTGRTKPVVL-SGVQKGCKKIMVLYvsNVRGGKAEKTNWVMHQYHL 197 4889************.999***********7666889999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-37 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.903 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MAGTSWLVDK SRIATKIKCA SGACDHGKVI WKSNPTKACP NCQHAIDNGD VAQEWPGLPK 60 GVKFDPSDQE IIWHLLAKVG VGDSKSHPFI DEFITTLEVD DGICYTHPQN LPGVRQDGSA 120 SHFFHRAIKA YNTGTRKRRK ILGQDFGDVR WHKTGRTKPV VLSGVQKGCK KIMVLYVSNV 180 RGGKAEKTNW VMHQYHLGTE EDEKDGEYII SKVFYQQQQV KLGDKNDQDV PEASEITGPH 240 PGLSVGEEGT IEKVDPVTPK LVTPEPPCNG RWCADLDLGQ ETHNVPQPPR MDCLDEIQAD 300 CQVLANESSM VETQHNEGMD DKENNAEDGQ KWWDSESQNL LDSQQLVEAL SLCDDLLQSQ 360 SPSRDGKHED HKNQPGLSVY AQLGPEHLKK DIEECQNLAL NPANIENDTP SEFQLSQLEF 420 GSQDSFISWG YSKAVN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4924 | 0.0 | cotyledon| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G100200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094476 | 0.0 | BT094476.1 Soybean clone JCVI-FLGm-18P19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518686.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-171 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | I1JDX2 | 0.0 | I1JDX2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G11140.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 | Representative plant | OGRP8264 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-165 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G100200.1.p |
Entrez Gene | 100803236 |