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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G099500.1.p | ||||||||
Common Name | GLYMA_02G099500, LOC100801107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | RAV | ||||||||
Protein Properties | Length: 402aa MW: 43610.2 Da PI: 9.4593 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.6 | 7.4e-14 | 81 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Glyma.02G099500.1.p 81 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 129 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 95.1 | 4.8e-30 | 210 | 324 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeF 68 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed g++W+++++y+++s++yvltkGW++F Glyma.02G099500.1.p 210 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqssngvsattiaavtaT---PtaaKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRF 296 89*************************9999987777766666553...0445999********************************** PP HHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 69 vkangLkegDfvvFkldgrsefelvvkv 96 vk+++Lk+gD+v F+++ +++l++ + Glyma.02G099500.1.p 297 VKEKNLKAGDTVCFHRSTGPDKQLYIDW 324 ***************8766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.4E-9 | 81 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-17 | 81 | 137 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.23E-26 | 81 | 136 | No hit | No description |
SMART | SM00380 | 6.6E-29 | 82 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 82 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-20 | 82 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-39 | 205 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.11E-28 | 208 | 324 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-27 | 209 | 313 | No hit | No description |
PROSITE profile | PS50863 | 12.76 | 210 | 328 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-27 | 210 | 325 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-24 | 210 | 328 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MDAISCMDES TTTESLSISL SPTSSSEKAK PSSMITSSEK VSLSPPPSNR LCRVGSGASA 60 VVDPDGGGSG AEVESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAARAY 120 DIAAQRFRGK DAVTNFKPLA GADDDDGESE FLNSHSKPEI VDMLRKHTYN DELEQSKRSR 180 GVVRRRGSAA AGTANSISGA CFTKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS 240 SNGVSATTIA AVTATPTAAK GVLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK 300 NLKAGDTVCF HRSTGPDKQL YIDWKTRNVV NNEVALFGPV GPVVEPIQMV RLFGVNILKL 360 PGSDTIVGNN NNASGCCNGK RREMELFSLE CSKKPKIIGA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-57 | 207 | 327 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31284 | 0.0 | cotyledon| flower| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G099500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518682.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Refseq | XP_028201716.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 1e-145 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A445LM09 | 0.0 | A0A445LM09_GLYSO; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | I1JDW7 | 0.0 | I1JDW7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G11060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-136 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G099500.1.p |
Entrez Gene | 100801107 |