PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 632aa MW: 69993 Da PI: 5.8276

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G082100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93	2.9e-29	64	147	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++r++k+Ckek+en+ k++k++keg++++++++ t+++fdql+ Glyma.02G082100.1.p 64 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGK--TYRFFDQLQ 147 8******************************************************************975544..6****98 PP
2	trihelix	103.6	1.5e-32	454	539	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++e++++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea Glyma.02G082100.1.p 454 RWPKMEVQALINLRTSLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHQLEA 539 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.748	57	121	IPR017877	Myb-like domain
SMART	SM00717	0.0028	61	123	IPR001005	SANT/Myb domain
CDD	cd12203	2.67E-23	63	128	No hit	No description
Pfam	PF13837	4.5E-19	63	149	No hit	No description
PROSITE profile	PS50090	7.108	447	511	IPR017877	Myb-like domain
SMART	SM00717	7.0E-4	451	513	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	451	510	IPR009057	Homeodomain-like
CDD	cd12203	8.43E-28	453	518	No hit	No description
Pfam	PF13837	2.0E-21	453	540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MLGDSAVLGT GGGGSGDAVA APPVVGGGAA ASGGAHEGGA NGGGGSNSGD DRVEEGDKSF 60 GGNRWPRQET LALLKIRSDM DVAFRDASVK GPLWEEVSRK LAELGYHRNA KKCKEKFENV 120 YKYHKRTKEG RSGKSEGKTY RFFDQLQALE NNPSIHAMQS PTPTPSKPPQ TTALLATPVS 180 IVVTTTTTPS TLVSNNATVP STNTPPLPQA ILNITPPSTL NITTPSFPSS NPTTYFPTQT 240 PNPTTNNNPP NTITPASFPN FSADLLSNSS FSSTSSEETT TMGGGGMRRK RKRKWKDFFE 300 RLMKEVIEKQ EGLQRRFLEA IEKREQERVV REEAWRMQEM QRINREREIL AQERSIAAAK 360 DAAVMTFLQK IAEHQQQEIN LEPALNNNNN SITVVPQQPV PQTTTTPTPT PQQAQTTIVP 420 EAPQPQQQIV VSNVENNKAD NNGENLTMGA SSSRWPKMEV QALINLRTSL ETKYQENGPK 480 GPLWEEISAL MRKMGYNRNA KRCKEKWENI NKYFKKVKES SKKRPEDSKT CPYFHQLEAL 540 YREKNKREGQ MKPDSMMAPL MVQPEQQWPP QTHVVPPEVT MGDAQNDPMD RRHEEVEEDE 600 ADKEIGDEDE DEDDEGSDNY EIVASKPASG E*

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MLGDSAVLGT GGGGSGDAVA APPVVGGGAA ASGGAHEGGA NGGGGSNSGD DRVEEGDKSF  60
GGNRWPRQET LALLKIRSDM DVAFRDASVK GPLWEEVSRK LAELGYHRNA KKCKEKFENV  120
YKYHKRTKEG RSGKSEGKTY RFFDQLQALE NNPSIHAMQS PTPTPSKPPQ TTALLATPVS  180
IVVTTTTTPS TLVSNNATVP STNTPPLPQA ILNITPPSTL NITTPSFPSS NPTTYFPTQT  240
PNPTTNNNPP NTITPASFPN FSADLLSNSS FSSTSSEETT TMGGGGMRRK RKRKWKDFFE  300
RLMKEVIEKQ EGLQRRFLEA IEKREQERVV REEAWRMQEM QRINREREIL AQERSIAAAK  360
DAAVMTFLQK IAEHQQQEIN LEPALNNNNN SITVVPQQPV PQTTTTPTPT PQQAQTTIVP  420
EAPQPQQQIV VSNVENNKAD NNGENLTMGA SSSRWPKMEV QALINLRTSL ETKYQENGPK  480
GPLWEEISAL MRKMGYNRNA KRCKEKWENI NKYFKKVKES SKKRPEDSKT CPYFHQLEAL  540
YREKNKREGQ MKPDSMMAPL MVQPEQQWPP QTHVVPPEVT MGDAQNDPMD RRHEEVEEDE  600
ADKEIGDEDE DEDDEGSDNY EIVASKPASG E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	292	RRKRKR
2	287	293	RRKRKRK
3	288	293	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G082100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372498	0.0	AF372498.1 Glycine max GT-2 factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518601.1	0.0	trihelix transcription factor GT-2
Refseq	XP_028199761.1	0.0	trihelix transcription factor GT-2-like
Refseq	XP_028199769.1	0.0	trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-146	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A445LL61	0.0	A0A445LL61_GLYSO; Trihelix transcription factor GT-2 isoform A
TrEMBL	K7K730	0.0	K7K730_SOYBN; Uncharacterized protein
STRING	GLYMA02G09060.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-80	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G082100.1.p
Entrez Gene	547624

Publications ? help Back to Top
O'Grady K,Goekjian VH,Naim CJ,Nagao RT,Key JL The transcript abundance of GmGT-2, a new member of the GT-2 family of transcription factors from soybean, is down-regulated by light in a phytochrome-dependent manner. Plant Mol. Biol., 2001. 47(3): p. 367-78 [PMID:11587508]