PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G080200.1.p
Common NameGLYMA_02G080200, LOC100804843
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 496aa    MW: 53705.6 Da    PI: 9.1823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G080200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20270319255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+t+e Aa+a+++a+++++g
  Glyma.02G080200.1.p 270 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 319
                          8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-33269328IPR001471AP2/ERF domain
SMARTSM003804.6E-38270333IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22270328IPR016177DNA-binding domain
PfamPF008472.2E-14270319IPR001471AP2/ERF domain
PROSITE profilePS5103225.791270327IPR001471AP2/ERF domain
CDDcd000181.57E-21270329No hitNo description
PRINTSPR003675.6E-11271282IPR001471AP2/ERF domain
PRINTSPR003675.6E-11293309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLKFGTSLLY NRFILNSISK GVLRRNHTRE ILGGSWQFKF GPKIVRKKTI VYIVFMSLLT  60
VAHQRGSGEF MRFTESHGGG GGGDGDGEYG YGHDDGRGGG GGGSLGLNFN QVMQQGEVTT  120
QGGTLVSGYN RGDPDLREMV SALTHVVVSS GSGQRSTEWI QQSGFPMMSA SSLSCLSSFS  180
SPSSSGASWV GHKRGREEEE SSSSHNMIQQ QQQSAPRLFR NIGDFMVPSQ GDSSSATEEA  240
PTSTTTSVTA VATTVTETPP PPGGGERRRK YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  300
DTEEAAARAY DEAALRFRGN RAKLNFPENV RAVPPIQPFQ ATTRLTVSDS TTSQFRPLVT  360
ETPPFIQQPQ IQGSSDLIRD YLQYSQLLQS DFQQQQIQQQ SPSSLLQQLY YNAQLASLQS  420
PSVLSSSPSF SSSVSPTPFP LFSTSAQFSS ASFPMFSSQQ MGYFQLPESC PPAGGVPEFP  480
PSTWSGTSGQ PPPSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22269330163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270ERRRKY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.265400.0hypocotyl| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G080200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353000.0AC235300.1 Glycine max strain Williams 82 clone GM_WBb0063F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621193.10.0ethylene-responsive transcription factor ABR1 isoform X1
RefseqXP_028199565.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A445LL030.0A0A445LL03_GLYSO; Ethylene-responsive transcription factor ERF112
TrEMBLK7K7150.0K7K715_SOYBN; Uncharacterized protein
STRINGGLYMA02G08835.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-28ethylene response factor 110