PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G073900.1.p
Common NameGLYMA_02G073900, LOC100792644
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 417aa    MW: 45738.4 Da    PI: 8.1766
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G073900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17322355134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Glyma.02G073900.1.p 322 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 355
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.1E-17316366IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543316352IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-14320379No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14320353IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-13321368No hitNo description
PfamPF003205.5E-15322355IPR000679Zinc finger, GATA-type
PROSITE patternPS003440322347IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MTSVNVRSLF HGGHPAPFVG PPTWALLLIT DFETIHSLIT HSSNKQNLKN KKIKIKHTLS  60
FFFPFVSHSH FSFSQENRKR KRKMIGNFID DIDCGSFFDH IDDLLEFPDD NAAPVAPPAN  120
FWSAESDSLP ASYTVFSDNS VTDLSAELSV SYDDIVQLEW LSNFVEDSFS GGSITMKKEE  180
EPQCTTTTKE DIAHAQFQTA SPVSVLESSS FCSGEKAASR GPEIYIPVPC GRVRSKRPRP  240
ATFNPHPVMQ LISPASSTGE NVQHNATTTS KAASSDSENF AESVIKGPKQ ASGEHKNKRK  300
IKVTFSSGQE QQNAPSQAVR KCLHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY  360
RPAASPTFCA AVHSNSHKKV IEMRNKTGTK SGFATDSAAS PELIPNTNNS LTLEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782RKRKRK
2235239KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.267440.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G073900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519961.20.0GATA transcription factor 8 isoform X1
RefseqXP_028199233.10.0GATA transcription factor 8-like isoform X1
TrEMBLA0A0R0KTZ80.0A0A0R0KTZ8_SOYBN; GATA transcription factor
TrEMBLA0A445LKN10.0A0A445LKN1_GLYSO; GATA transcription factor
STRINGGLYMA02G08145.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-42GATA family protein