PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.02G071500.1.p | ||||||||
Common Name | GLYMA_02G071500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 292aa MW: 32653.9 Da PI: 7.9324 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.8 | 2.6e-17 | 216 | 250 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG+++++ +l Glyma.02G071500.1.p 216 CTHCLAQRTPQWRAGPLGPKTLCNACGVRFKSGRL 250 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.0E-15 | 210 | 264 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-14 | 212 | 274 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-13 | 214 | 248 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 10.95 | 214 | 246 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.59E-11 | 215 | 262 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 216 | 241 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.9E-15 | 216 | 250 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MLWSFILLLV DMDVCRNVSV SSSECQQELP TLDDLFSHQN TEVDFGLEWL SVFVEDCFSS 60 RPSCLLAPGG VQTTSTSTST KPSSGTILQR PQQLSHHCPL QNFAVPGKAR SKRKRKRLSA 120 PRTTKHTLST WSQHFSTQND GVSSDPPLLK QAYWLADSEL IVPKKKDVEQ EEEEGVVVVV 180 KKEKLGDYCD HDEGDEINNN NSNNDDNVQH PIPRRCTHCL AQRTPQWRAG PLGPKTLCNA 240 CGVRFKSGRL LPEYRPAKSP TFVSYLHSNS HKKVMEMRMG VVGVFSTDNN K* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.22476 | 0.0 | flower |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.02G071500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT089250 | 0.0 | BT089250.1 Soybean clone JCVI-FLGm-1B13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518214.1 | 0.0 | GATA transcription factor 2 isoform X2 | ||||
Refseq | XP_028198986.1 | 0.0 | GATA transcription factor 2-like isoform X2 | ||||
TrEMBL | A0A0R0L3S5 | 0.0 | A0A0R0L3S5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G07850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45050.1 | 3e-34 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.02G071500.1.p |