PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G070600.1.p
Common NameGLYMA_02G070600, LOC100813376
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 411aa    MW: 46762.4 Da    PI: 6.7772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G070600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.1e-56231491128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee++++yL++kv ++++++ ++i e+d +k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdk
  Glyma.02G070600.1.p  23 LPPGFRFHPTDEEIITCYLTEKVLNRTFSA-TAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDK 111
                          79**************************99.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ k++lvg+kktLvfy+grapkgek++Wvmhe+rl
  Glyma.02G070600.1.p 112 EIFKGKNNLVGMKKTLVFYRGRAPKGEKSNWVMHEFRL 149
                          ****99******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6120174IPR003441NAC domain
PROSITE profilePS5100557.78423174IPR003441NAC domain
PfamPF023658.7E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMEEPVVVNK GDDHDHDHEP LDLPPGFRFH PTDEEIITCY LTEKVLNRTF SATAIGEADF  60
NKCEPWDLPK KAKMGEKDWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIFKGKNNL  120
VGMKKTLVFY RGRAPKGEKS NWVMHEFRLD GKFACYNLPK ASKDEWVVCK VFHKGNTTTT  180
DVVNKRALPI INPCLLRMNS SIGEDLFDFS SLPPLVDPLF DQTSNKHIDN DFKGTNNTPS  240
SSSAKPPSSG YYLPNFINNN NNQHMLMMMK PEEHKMYEIP TNNYASTSQV NFTTTNNPIM  300
GISTGNNNTL LSQPQIRTQN STSVPFNMFQ DYYNYMNQGK QCKMEQFSNT KNQPVVSASQ  360
DTCLSNDTSS VVSKQDNNIG RNKALYEDNF EAPSSVATTL SDLECLWDDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-502117815169NO APICAL MERISTEM PROTEIN
1ut4_B4e-502117815169NO APICAL MERISTEM PROTEIN
1ut7_A4e-502117815169NO APICAL MERISTEM PROTEIN
1ut7_B4e-502117815169NO APICAL MERISTEM PROTEIN
3swm_A4e-502117818172NAC domain-containing protein 19
3swm_B4e-502117818172NAC domain-containing protein 19
3swm_C4e-502117818172NAC domain-containing protein 19
3swm_D4e-502117818172NAC domain-containing protein 19
3swp_A4e-502117818172NAC domain-containing protein 19
3swp_B4e-502117818172NAC domain-containing protein 19
3swp_C4e-502117818172NAC domain-containing protein 19
3swp_D4e-502117818172NAC domain-containing protein 19
4dul_A4e-502117815169NAC domain-containing protein 19
4dul_B4e-502117815169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.233160.0flower| hypocotyl| leaf| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G070600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619220.0EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518198.10.0NAC domain-containing protein 87
RefseqXP_028198895.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-110NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A445LKS00.0A0A445LKS0_GLYSO; NAC domain-containing protein 87
TrEMBLI1JD400.0I1JD40_SOYBN; Uncharacterized protein
STRINGGLYMA02G07760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-106Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]