PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G067600.1.p
Common NameGLYMA_02G067600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 275aa    MW: 29805.3 Da    PI: 4.7223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G067600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-193180255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Glyma.02G067600.1.p 31 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 80
                         588******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-343194IPR001471AP2/ERF domain
CDDcd000183.81E-313187No hitNo description
PROSITE profilePS5103221.143188IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-213188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-293187IPR001471AP2/ERF domain
PRINTSPR003671.1E-83243IPR001471AP2/ERF domain
PfamPF008473.1E-123280IPR001471AP2/ERF domain
PRINTSPR003671.1E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKPYTSSPSS SRSKKKQTTT QQDHETAWGG RYLGVRRRPW GRYAAEIRDP STKERHWLGT  60
FDTAEEAALA YDRAARSMRG SRARTNFVYP DTPPGSSVTS ILSPDEQTQT QIHQAQEELS  120
SLFNPNPFAQ PDPNPHFSLC GYSGVTNTPT FSATEEIAPS GGYSYNYGYT EGGTSMESSH  180
FKLFDDGETE LPPLPPDITS SMGYEMGNGF YGNDAGFSDP SFGANATGSG YPYSGFGSGD  240
YVVHSPLFSA MPPVSDNVST GHEGFDLASS SFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-203287359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-202787162ATERF1
3gcc_A3e-202787162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.297960.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G067600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976380.0BT097638.1 Soybean clone JCVI-FLGm-16E6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304399.20.0ethylene-responsive transcription factor LEP-like
TrEMBLI1JD100.0I1JD10_SOYBN; Uncharacterized protein
STRINGGLYMA02G07460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-31ERF family protein