PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 229aa MW: 24852.2 Da PI: 7.6244

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G066200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.6	9.7e-21	43	92	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a++aa+++++g Glyma.02G066200.1.p 43 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDAAALRFKG 92 8******.******94....45**********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.5E-33	42	101	IPR001471	AP2/ERF domain
CDD	cd00018	5.43E-22	42	101	No hit	No description
PROSITE profile	PS51032	25.277	43	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-23	43	101	IPR016177	DNA-binding domain
Pfam	PF00847	3.5E-14	43	92	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-37	43	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-12	44	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-12	66	82	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSNNKNNTFF PTPHGQISTS EFVNSQNPPQ ATNQGIDDIR KKHYRGVRQR PWGKWAAEIR 60 DPKKAARVWL GTFDTAEAAA MAYDAAALRF KGNKAKLNFP ERVVMPIPPQ TNNNNSTSSS 120 APTTQSSSSL PPPQSLHNNS SLSAEGFPNL EEYARLLSCS DDDDFQRVAL GLYQHHNNED 180 FICGSSQPPP VPFFVSSSSS SSAMTSSYSD FLGQGGSTGF DEGNKRGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-27	42	103	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.2175	0.0	cotyledon\| hypocotyl\| leaf\| meristem\| root\| somatic embryo\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G066200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT099398	0.0	BT099398.1 Soybean clone JCVI-FLGm-23J22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001239988.1	1e-170	uncharacterized LOC100796480
Refseq	XP_028198379.1	1e-170	ethylene-responsive transcription factor ERF113-like
TrEMBL	A0A445LKC6	1e-168	A0A445LKC6_GLYSO; Ethylene-responsive transcription factor ERF114
TrEMBL	C6TNR7	1e-168	C6TNR7_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA02G07310.1	1e-169	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20133	3	5
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	1e-31	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G066200.1.p
Entrez Gene	100796480

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]