PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 675aa MW: 73781.8 Da PI: 8.0111

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G060000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	560	597	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Glyma.02G060000.1.p 560 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 597 664559******************************88 PP
2	BELL	122.1	2.4e-39	420	491	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++l+eVd+rY++y+eq+++v++sF++v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Glyma.02G060000.1.p 420 DRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 491 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.7E-80	349	489	IPR006563	POX domain
Pfam	PF07526	7.1E-52	355	488	IPR006563	POX domain
PROSITE profile	PS50071	12.568	538	601	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	541	605	IPR001356	Homeobox domain
CDD	cd00086	1.52E-12	541	602	No hit	No description
SuperFamily	SSF46689	5.13E-17	542	608	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	544	607	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	558	597	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MGIATPSSSL PSILSHSKTQ QQIHHSNSSM SQDYHHHHQG IFSFPNGFER SAAATTMTHQ 60 DPHQQQIRRD KVRVQGFEPP PSHQTLVPIE EDESGSLPVY ETAGMLSEMF NFTPGATELL 120 EQQQQQQQPM ATTTARAVGS GGSEWYGNRQ GMLSNLGPLG DSKNHHHHGS VNSRDSSSSS 180 IVQNQHHHHH NHHHHQMSSI NADSAAAMQL FLMNPQTTRS PSPPPPPPPS SSTLHMLLPN 240 TFPPGSGGSF GQFTWLPDTT QEGGPSTVVE GPGHGHGQGL SLSLSSSIEA AKAEELRMGD 300 SGFLYYNQAS GGPSSYKSTL GGHHHQALLG QAHQGNVGFG AASSSTSSLG VVNALRNSKY 360 AKAAQELLEE FCSVGRGQFK KNKFNRQLSN PSSNLGGSGG GGGGASSSSS KDIPPLSAAD 420 RIEHQRRKVK LLTMLDEVDR RYSHYCEQMH MVVNSFDMVM GFGAAVPYTA LAQKAMSRHF 480 RCLKDAITAQ LKHSCEVLGE KDGAGNSGLT KGETPRLKML EQSLRQQRAF HQMGMMEQEA 540 WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK 600 PMVEDMYQQE LKEAEGAEED RERNQSSSNN SGHQLAQTPT PSTTASTATA PPPTQRHHQT 660 EKDPIPKATL HSHR*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MGIATPSSSL PSILSHSKTQ QQIHHSNSSM SQDYHHHHQG IFSFPNGFER SAAATTMTHQ  60
DPHQQQIRRD KVRVQGFEPP PSHQTLVPIE EDESGSLPVY ETAGMLSEMF NFTPGATELL  120
EQQQQQQQPM ATTTARAVGS GGSEWYGNRQ GMLSNLGPLG DSKNHHHHGS VNSRDSSSSS  180
IVQNQHHHHH NHHHHQMSSI NADSAAAMQL FLMNPQTTRS PSPPPPPPPS SSTLHMLLPN  240
TFPPGSGGSF GQFTWLPDTT QEGGPSTVVE GPGHGHGQGL SLSLSSSIEA AKAEELRMGD  300
SGFLYYNQAS GGPSSYKSTL GGHHHQALLG QAHQGNVGFG AASSSTSSLG VVNALRNSKY  360
AKAAQELLEE FCSVGRGQFK KNKFNRQLSN PSSNLGGSGG GGGGASSSSS KDIPPLSAAD  420
RIEHQRRKVK LLTMLDEVDR RYSHYCEQMH MVVNSFDMVM GFGAAVPYTA LAQKAMSRHF  480
RCLKDAITAQ LKHSCEVLGE KDGAGNSGLT KGETPRLKML EQSLRQQRAF HQMGMMEQEA  540
WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK  600
PMVEDMYQQE LKEAEGAEED RERNQSSSNN SGHQLAQTPT PSTTASTATA PPPTQRHHQT  660
EKDPIPKATL HSHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	547	604	5	62	Homeobox protein Meis2
3k2a_B	3e-16	547	604	5	62	Homeobox protein Meis2
4xrm_A	3e-16	547	604	5	62	Homeobox protein Meis2
4xrm_B	3e-16	547	604	5	62	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19019	0.0	cotyledon\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G060000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574714.3	0.0	LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
Refseq	XP_028197756.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_028197765.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-149	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A0R0KZM6	0.0	A0A0R0KZM6_SOYBN; Uncharacterized protein
STRING	GLYMA02G06730.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-145	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Glyma.02G060000.1.p
Entrez Gene	100807143

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]