PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G060000.1.p
Common NameGLYMA_02G060000, LOC100807143
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 675aa    MW: 73781.8 Da    PI: 8.0111
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G060000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-095605971954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Glyma.02G060000.1.p 560 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 597
                          664559******************************88 PP
2BELL122.12.4e-39420491172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLl++l+eVd+rY++y+eq+++v++sF++v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Glyma.02G060000.1.p 420 DRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 491
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-80349489IPR006563POX domain
PfamPF075267.1E-52355488IPR006563POX domain
PROSITE profilePS5007112.568538601IPR001356Homeobox domain
SMARTSM003892.0E-9541605IPR001356Homeobox domain
CDDcd000861.52E-12541602No hitNo description
SuperFamilySSF466895.13E-17542608IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28544607IPR009057Homeodomain-like
PfamPF059203.3E-18558597IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MGIATPSSSL PSILSHSKTQ QQIHHSNSSM SQDYHHHHQG IFSFPNGFER SAAATTMTHQ  60
DPHQQQIRRD KVRVQGFEPP PSHQTLVPIE EDESGSLPVY ETAGMLSEMF NFTPGATELL  120
EQQQQQQQPM ATTTARAVGS GGSEWYGNRQ GMLSNLGPLG DSKNHHHHGS VNSRDSSSSS  180
IVQNQHHHHH NHHHHQMSSI NADSAAAMQL FLMNPQTTRS PSPPPPPPPS SSTLHMLLPN  240
TFPPGSGGSF GQFTWLPDTT QEGGPSTVVE GPGHGHGQGL SLSLSSSIEA AKAEELRMGD  300
SGFLYYNQAS GGPSSYKSTL GGHHHQALLG QAHQGNVGFG AASSSTSSLG VVNALRNSKY  360
AKAAQELLEE FCSVGRGQFK KNKFNRQLSN PSSNLGGSGG GGGGASSSSS KDIPPLSAAD  420
RIEHQRRKVK LLTMLDEVDR RYSHYCEQMH MVVNSFDMVM GFGAAVPYTA LAQKAMSRHF  480
RCLKDAITAQ LKHSCEVLGE KDGAGNSGLT KGETPRLKML EQSLRQQRAF HQMGMMEQEA  540
WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK  600
PMVEDMYQQE LKEAEGAEED RERNQSSSNN SGHQLAQTPT PSTTASTATA PPPTQRHHQT  660
EKDPIPKATL HSHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16547604562Homeobox protein Meis2
3k2a_B3e-16547604562Homeobox protein Meis2
4xrm_A3e-16547604562Homeobox protein Meis2
4xrm_B3e-16547604562Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.190190.0cotyledon| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G060000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574714.30.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
RefseqXP_028197756.10.0BEL1-like homeodomain protein 4
RefseqXP_028197765.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-149BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0R0KZM60.0A0A0R0KZM6_SOYBN; Uncharacterized protein
STRINGGLYMA02G06730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-145BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]