PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 213aa MW: 25015.1 Da PI: 6.1097

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G058900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	54	107	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq+ Le+ F +++++ e++ +LA +l+L+ rqV vWFqNrR ++k Glyma.02G058900.1.p 54 KKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWK 107 56699************************************************9 PP
2	HD-ZIP_I/II	110.1	1.5e-35	54	144	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkr+l+ eq++lLE++F++e+kLe+erK +la eL l+prqvavWFqnrR R+kt++lE++y+ Lk+ +++ + ++++Le+ev +L+e+l Glyma.02G058900.1.p 54 KKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWKTQKLEEEYSNLKNVHETTMLDKCHLENEVLKLKEQL 143 9**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 Glyma.02G058900.1.p 144 L 144 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.5E-15	52	113	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-16	54	107	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.325	54	109	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	54	117	IPR009057	Homeodomain-like
CDD	cd00086	7.92E-14	54	110	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-19	56	116	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	84	107	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MNHQLIEDHM MLFPWLCPGG AFTEVTPQQG ENNKPRHKRN RKNRGGENGT IITKKRKLTV 60 EQISLLERNF SNEHKLESER KDQLALELSL DPRQVAVWFQ NRRSRWKTQK LEEEYSNLKN 120 VHETTMLDKC HLENEVLKLK EQLLETKKEI EQLLERGEKA PSNNSSSSQS MEEAVNPPFL 180 GEFRVEEYDD GDVFYIPETH HINGMEWINL YN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	43	KRNRKNR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G058900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519905.1	1e-157	homeobox-leucine zipper protein ATHB-40
Refseq	XP_028197554.1	1e-157	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	6e-59	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A445LK31	1e-155	A0A445LK31_GLYSO; Homeobox-leucine zipper protein ATHB-40
TrEMBL	K7K6N9	1e-155	K7K6N9_SOYBN; Uncharacterized protein
STRING	GLYMA02G06560.2	1e-156	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57
Representative plant	OGRP3776	10	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	9e-42	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Glyma.02G058900.1.p
Entrez Gene	100803948

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]