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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G055800.1.p | ||||||||
Common Name | GLYMA_02G055800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8720.71 Da PI: 9.9995 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 4 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ + +W +a+++g ++ +++k ++ Glyma.02G055800.1.p 4 SWTPRQNKLFERALAKYDREtpdRWQNVANEVG--KSVEEVKRHY 46 7*****************88************8..9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.57 | 1 | 54 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.91E-12 | 3 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.11E-5 | 4 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-6 | 4 | 46 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MASSWTPRQN KLFERALAKY DRETPDRWQN VANEVGKSVE EVKRHYEILK EDIRRIERGQ 60 VAFPYRTSNS NSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-24 | 5 | 71 | 11 | 79 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G055800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547982.1 | 6e-46 | protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 3e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | I1JCP3 | 3e-47 | I1JCP3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G06230.1 | 5e-48 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 8e-28 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G055800.1.p |