PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G053100.3.p
Common NameGLYMA_02G053100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 306aa    MW: 33730.4 Da    PI: 9.8064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G053100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000332092461254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++++L++l+ +      +K s a +L +A+ YI+ L
  Glyma.02G053100.3.p 209 RKEKLGDRIQTLQRLVAPF-----GKTSTAYVLSEAIGYIHFL 246
                          7788999*********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.817197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-7207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-4207251No hitNo description
SuperFamilySSF474593.93E-10207259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTDSLRISTR QAFGFHNGKS LITQHPVSDN NNLFPARIFK GGMINTSMKG MEESSQYSSP  60
SFLSSIGVTG EEFFPNDRPI DGGTLSRRYN NNFGDVSLIS NLPTLDMASS LVSCSLGLNP  120
KMFDLHTSYG GSCGLIQPCY DTFGLNESIS LSHSHMHGRE NSPSNSSSKT SSFVSEVATK  180
KRPSNCSLPK ESEAKVKKSR PSCPPLKVRK EKLGDRIQTL QRLVAPFGKT STAYVLSEAI  240
GYIHFLHQQI QTLSIPYMKS AQSKPSRMVQ LDSNKVDRRE FMPDLRSRGL CLVPLSYASF  300
IHRCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G053100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520288.20.0transcription factor bHLH111 isoform X2
TrEMBLA0A0R0L1K60.0A0A0R0L1K6_SOYBN; Uncharacterized protein
STRINGGLYMA02G05971.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-35bHLH family protein