PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G041000.1.p
Common NameGLYMA_02G041000, LOC102662951
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 213aa    MW: 24032.1 Da    PI: 10.9406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G041000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-1054100354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++h+e+E+rRR riN  +e+Lr +lP+        K +Ka++L ++++ +k+L
  Glyma.02G041000.1.p  54 KKHSEAEKRRRMRINGQYETLRNILPNiI------KKDKASVLAETIKQVKEL 100
                          68*************************55......899999999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.27251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-754100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-754105No hitNo description
Gene3DG3DSA:4.10.280.104.2E-1355112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1355112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-857106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00139144205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVMLRQGMQH VRNYYNSEAQ MMRSSFSQPF ISRTYKTSFL KPKSKAEIKV LAAKKHSEAE  60
KRRRMRINGQ YETLRNILPN IIKKDKASVL AETIKQVKEL KKKVSKLEQD SSTNPSKDVV  120
KFPSGAEKLR LERCNIEEGL VKATLSCEDR PELMQLISKA VGSANTKLVK AEIVSVGGRT  180
RSVLWVQGLG NDGMGMLKSH LRTALHKPRS FQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G041000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574643.11e-156transcription factor bHLH131
TrEMBLK7K6D41e-155K7K6D4_SOYBN; Uncharacterized protein
STRINGGLYMA02G04650.21e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Representative plantOGRP1491034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-40bHLH family protein