PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G041000.1.p

Common Name

GLYMA_02G041000, LOC102662951

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 213aa MW: 24032.1 Da PI: 10.9406

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G041000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	54	100	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr +lP+ K +Ka++L ++++ +k+L Glyma.02G041000.1.p 54 KKHSEAEKRRRMRINGQYETLRNILPNiI------KKDKASVLAETIKQVKEL 100 68*************************55......899999999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.272	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-7	54	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.46E-7	54	105	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-13	55	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-13	55	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-8	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00139	144	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MVMLRQGMQH VRNYYNSEAQ MMRSSFSQPF ISRTYKTSFL KPKSKAEIKV LAAKKHSEAE 60 KRRRMRINGQ YETLRNILPN IIKKDKASVL AETIKQVKEL KKKVSKLEQD SSTNPSKDVV 120 KFPSGAEKLR LERCNIEEGL VKATLSCEDR PELMQLISKA VGSANTKLVK AEIVSVGGRT 180 RSVLWVQGLG NDGMGMLKSH LRTALHKPRS FQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G041000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574643.1	1e-156	transcription factor bHLH131
TrEMBL	K7K6D4	1e-155	K7K6D4_SOYBN; Uncharacterized protein
STRING	GLYMA02G04650.2	1e-155	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32
Representative plant	OGRP14910	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	3e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G041000.1.p
Entrez Gene	102662951