PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G025400.1.p
Common NameGLYMA_02G025400, LOC100778795
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 256aa    MW: 27934.3 Da    PI: 8.104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G025400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-11138185455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Glyma.02G025400.1.p 138 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 185
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.86E-10132189No hitNo description
SuperFamilySSF474596.41E-18132202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18134203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAAMMNAA ANTASYHLSE IWHFPPPNAP DALGLRRAHF APGPTRHAVP GRDLASIAPK  60
KRRQAEEEEV ESTRGASTTN AVDEGCGDGK RVKTSESGKG EGESCSGKPA KQSGKPPSEP  120
PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ALVLDEIINY  180
IQSLQRQVEF LSMKLEAVNS RIAPGIEVFP PKDFDQQTFD TTGMPFASQA TRDYSRGSSP  240
EWLHMQVGDG FERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.232490.0hypocotyl| pod| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G025400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466841e-114BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519223.10.0transcription factor BHLH089
RefseqXP_028193956.10.0transcription factor BHLH089-like
SwissprotQ69WS31e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A445LIV10.0A0A445LIV1_GLYSO; Transcription factor BHLH094
TrEMBLK7K6260.0K7K626_SOYBN; Uncharacterized protein
STRINGGLYMA02G02934.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-84BIG PETAL P