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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.02G019900.1.p |
| Common Name | GLYMA_02G019900, LOC100775220 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
Whirly |
| Protein Properties |
Length: 263aa MW: 29790.5 Da PI: 10.2295 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.02G019900.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 114.8 | 6.2e-36 | 81 | 223 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfalsatevaelvdlaskesceffhdpaakgsneG 88
svy k+ l+v ++ p+fe+ sg++k++++G ++l++a++++ + ydW++kq+f+ls+ e+++l+ l++++s ef h++ + +s+
Glyma.02G019900.1.p 81 SVYTKKGMLTVIPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEpiYDWNHKQTFSLSVSEMGTLIILGARDSWEFSHETVKLKSK-I 169
79***************************************9976444**********************************998886.6 PP
Whirly 89 kvrkalkvePlpdGsGlfvnlsvtnslvk...gnesfsvPvskaefavlrsllv 139
+vrk+lkvePl d +G++++l v ++ + ++s+ +Pv++a+ vlrsl++
Glyma.02G019900.1.p 170 DVRKVLKVEPLLDATGHLFSLRVLKKPANmegIQKSIFLPVTRADLEVLRSLFN 223
8**********************987655222689****************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MSQIQSITLK HLSLPTHTFV PSKFKIPLNR NFSLTPRFTF SSSLSVKCYH PNLVQPKPFP 60
PLPQRPPFAE LPQQRVYVGY SVYTKKGMLT VIPRPPEFES KSSGAFKVSK EGYVVLQFAP 120
SVGADEPIYD WNHKQTFSLS VSEMGTLIIL GARDSWEFSH ETVKLKSKID VRKVLKVEPL 180
LDATGHLFSL RVLKKPANME GIQKSIFLPV TRADLEVLRS LFNYIMPYLL GWNAFGNSIK 240
PEVYSQVNST NPRYGADNEW NR*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 2e-62 | 75 | 261 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 2e-62 | 75 | 261 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 2e-62 | 75 | 261 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 2e-62 | 75 | 261 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Carella P,Wilson DC,Cameron RK
Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis.
Front Plant Sci, 2014. 5: p. 775
[PMID:25620972] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Ren Y,Li Y,Jiang Y,Wu B,Miao Y
Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
Mol Plant, 2017. 10(5): p. 749-763
[PMID:28412544] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Guan Z,Wang W,Yu X,Lin W,Miao Y
Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:30065159]
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