PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G244800.1.p
Common NameGLYMA_01G244800, LOC100782165
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 362aa    MW: 40818.8 Da    PI: 5.6254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G244800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1632122199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++ps+v    +l lpkkf++ ++  ++ ++t+ lede+g+ +e k+  +k +    l++GW++F  a++L e D+++F+l++ s+f
  Glyma.01G244800.1.p  32 FLKSMLPSHVAGGFWLGLPKKFCNLYM--PKLDTTIALEDETGQLYETKYLAQKAG----LSAGWRGFSIAHNLLEMDVLIFHLVQPSKF 115
                          89*********************8886..44889****************444444....************************998999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Glyma.01G244800.1.p 116 --RVYIIRS 122
                          ..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1825123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2225122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-2330121No hitNo description
SMARTSM010191.8E-1832123IPR003340B3 DNA binding domain
PfamPF023629.6E-1432122IPR003340B3 DNA binding domain
PROSITE profilePS5086312.06932123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGIVIDAPPC NTQAYQRAKE VQANLSPQFP TFLKSMLPSH VAGGFWLGLP KKFCNLYMPK  60
LDTTIALEDE TGQLYETKYL AQKAGLSAGW RGFSIAHNLL EMDVLIFHLV QPSKFRVYII  120
RSQESDELDG ALVLLKSDGC RKQSDDANDH KNSGMIFCAN VSHPDQVENT SEDFDSGIRF  180
SESVVSFKQV TGVENFRIVV NGLVIDSELS KYIRNKYYEL CCSQRSFLHD HLLEGLNTKL  240
AAGIISETIN IADAIKASNL TTSPDSLVIW DKTLKAFETM GMNVSFLLIR LDQLMKLALK  300
LKRYKEVTLE RDHAAEELKA LEAKLLEVKQ TINRLDQEND IQHMHPERLE TMFQELADAP  360
W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G244800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516780.10.0B3 domain-containing protein Os01g0234100 isoform X1
RefseqXP_028224351.10.0B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLA0A445M8440.0A0A445M844_GLYSO; B3 domain-containing protein isoform C
TrEMBLK7K5N20.0K7K5N2_SOYBN; Uncharacterized protein
STRINGGLYMA01G45623.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein