 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.01G240100.1.p |
Common Name | GLYMA_01G240100, LOC100815499 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
HD-ZIP |
Protein Properties |
Length: 732aa MW: 80340 Da PI: 6.2778 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.01G240100.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.4 | 6.7e-20 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ +++t+ q+ee+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k
Glyma.01G240100.1.p 63 KKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 118
5778899**********************************************999 PP
|
2 | START | 206.7 | 8.9e-65 | 250 | 470 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77
ela +a++el ++a+a+ep+Wv s e++n+de+l++f++ + ++ea+r+s+vv+m++ +l +l+d++ qW++ +
Glyma.01G240100.1.p 250 ELAVAAMEELTRLAQAGEPLWVPSNhhsEILNEDEYLRTFPTRGLgpkplgLRSEASRESVVVIMNHINLIDILMDVN-QWSTVFCgivs 338
57899***********************************88766*********************************.******99999 PP
EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
+a tlev+s+g galq+m++e+q+ splvp R+ +fvRy++q+++g w++vdvS+d+ ++ + + R++++pSg+li++++ng
Glyma.01G240100.1.p 339 RALTLEVLSTGiagnynGALQVMSSEFQVASPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPST----ISRSRRRPSGCLIQELPNG 424
*****************************************************************88....79***************** PP
EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
+skvtw+ehv++++r +h+++r lv+sgla+gak+wvatl+rqce+
Glyma.01G240100.1.p 425 YSKVTWIEHVEVDDRAVHSIYRTLVNSGLAFGAKRWVATLERQCER 470
********************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 732 aa
Download sequence Send
to blast |
MFDTNMFDSH PHLLDMSPPH KTTCSESDLA KPCRDDEYET KSITDTMDAP SGDDQDPNPR 60 PKKKGYRRHT QRQIEEMEAF FKQCPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKTQ 120 HERNENAILK AENEKLRAEN SRYKEALTNA TCPNCGGPAA LGEMSFDEQH LRIENARLRE 180 EIDRISGIAA KYVGKPVTSS YSNLSSLNNN HVPVGNYGSQ SGTVGEMYGG SDLFRPLPAP 240 ADADKPMIVE LAVAAMEELT RLAQAGEPLW VPSNHHSEIL NEDEYLRTFP TRGLGPKPLG 300 LRSEASRESV VVIMNHINLI DILMDVNQWS TVFCGIVSRA LTLEVLSTGI AGNYNGALQV 360 MSSEFQVASP LVPTRENYFV RYCKQQPDGI WAVVDVSLDN LRPSTISRSR RRPSGCLIQE 420 LPNGYSKVTW IEHVEVDDRA VHSIYRTLVN SGLAFGAKRW VATLERQCER LASSMANNIP 480 AGDLCVITSA EGRKSMMKLA ERMVMSYCTG VGASTAHAWT TLSATGCDDV RVMTRKSTDE 540 PGRPPGIVLS AATSFWLPVP PKRVFHFLRD QNSRNEWDIL SNGGLVQELA HIANGRDPGN 600 CVSLLRVNSA NSSQSNMLIL QESCTDSTGS YVVYAPVDIV AMNVVLSGGD PDYVALLPSG 660 FAILPDGPPA LNGGPIHDVG SGGSLLTVAF QILVDSAPTA KLSLGSVATV NSLIKCTVER 720 IKVAVIRDNT T*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015043 | 1e-143 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Takada S,Takada N,Yoshida A
Induction of epidermal cell fate in Arabidopsis shoots. Plant Signal Behav, 2013. 8(11): p. e26236 [PMID:23989220] - Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development. Plant Cell Physiol., 2015. 56(9): p. 1855-66 [PMID:26220906] - Katagiri Y, et al.
The coordination of ploidy and cell size differs between cell layers in leaves. Development, 2016. 143(7): p. 1120-5 [PMID:26903507] - Seeliger I, et al.
The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] - Schwarz EM,Roeder AH
Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals. Front Plant Sci, 2016. 7: p. 1744 [PMID:27920789] - Meyer HM, et al.
Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal. Elife, 2018. [PMID:28145865]
|