 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.01G233000.1.p |
Common Name | GLYMA_01G233000, LOC100793665 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
HSF |
Protein Properties |
Length: 465aa MW: 51846.8 Da PI: 4.6886 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.01G233000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 115.5 | 3.4e-36 | 15 | 107 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
Fl+k+y++++d++++ ++sw en+nsfvv++ +fa+++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k
Glyma.01G233000.1.p 15 FLSKTYDMVDDPSTDLVVSWGENNNSFVVWNVPQFATDILPNHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGEK 95
9****************************************************************999.........************* PP
XXXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkkse 103
+ll++i r+ks+
Glyma.01G233000.1.p 96 QLLKSISRRKSA 107
*********986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MEGASWNSSV CVAPFLSKTY DMVDDPSTDL VVSWGENNNS FVVWNVPQFA TDILPNHFKH 60 NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS ISRRKSAHVN GSQQASQVHK 120 SAAGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLQNVG QRVQSMEQRQ 180 QQMMSFLAKA MQSPGFLAQF VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLDGH 240 IVKYQSSINE AAKALFRQIL QINNSTTQSS IKNPDVFLID DIPSAIASDS SSSSTQVSNV 300 MVPPISELTS MEVGSQFPLS CMPSNISEVQ SSPAVLGFCR SQGMETESSL LNHELNVMGA 360 DTRNMGEIDM MSTVLDEADE ADHFSPDTDG ISKLPEISDE FWELFLRPSP LTEDTEETKC 420 SSLGCGLTED QGLPSEMGNK QENFDTIQHV DCLTQQMGLH ALEY*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 4e-24 | 12 | 107 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 5e-24 | 12 | 104 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-24 | 12 | 104 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-24 | 12 | 104 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Publications
? help Back to Top |
- Hsu SF,Jinn TL
AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs. Plant Signal Behav, 2010. 5(8): p. 1042-4 [PMID:20657173] - Bechtold U, et al.
Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. J. Exp. Bot., 2013. 64(11): p. 3467-81 [PMID:23828547] - Guan Q,Yue X,Zeng H,Zhu J
The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]
|