PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G233000.1.p
Common NameGLYMA_01G233000, LOC100793665
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 465aa    MW: 51846.8 Da    PI: 4.6886
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G233000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36151072103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sw en+nsfvv++  +fa+++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Glyma.01G233000.1.p  15 FLSKTYDMVDDPSTDLVVSWGENNNSFVVWNVPQFATDILPNHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGEK 95 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+ks+
  Glyma.01G233000.1.p  96 QLLKSISRRKSA 107
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-5711104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.8E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-3212104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEGASWNSSV CVAPFLSKTY DMVDDPSTDL VVSWGENNNS FVVWNVPQFA TDILPNHFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS ISRRKSAHVN GSQQASQVHK  120
SAAGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLQNVG QRVQSMEQRQ  180
QQMMSFLAKA MQSPGFLAQF VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLDGH  240
IVKYQSSINE AAKALFRQIL QINNSTTQSS IKNPDVFLID DIPSAIASDS SSSSTQVSNV  300
MVPPISELTS MEVGSQFPLS CMPSNISEVQ SSPAVLGFCR SQGMETESSL LNHELNVMGA  360
DTRNMGEIDM MSTVLDEADE ADHFSPDTDG ISKLPEISDE FWELFLRPSP LTEDTEETKC  420
SSLGCGLTED QGLPSEMGNK QENFDTIQHV DCLTQQMGLH ALEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-241210717123Heat shock factor protein 1
5d5u_B5e-241210426129Heat shock factor protein 1
5d5v_B5e-241210426129Heat shock factor protein 1
5d5v_D5e-241210426129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.443400.0flower| hypocotyl| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G233000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573849.10.0heat stress transcription factor A-1b
RefseqXP_028180107.10.0heat stress transcription factor A-1b-like
SwissprotO818211e-140HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0B2RLS10.0A0A0B2RLS1_GLYSO; Heat stress transcription factor A-1b
TrEMBLI1JAM50.0I1JAM5_SOYBN; Uncharacterized protein
STRINGGLYMA01G44330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-123heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]