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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G228100.1.p | ||||||||
Common Name | GLYMA_01G228100, LOC100781272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | E2F/DP | ||||||||
Protein Properties | Length: 339aa MW: 37556.8 Da PI: 5.4918 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.3 | 1.1e-27 | 91 | 173 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Glyma.01G228100.1.p 91 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpingvstpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 173 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.3E-130 | 4 | 338 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 3.5E-46 | 87 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.4E-34 | 90 | 173 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.9E-25 | 92 | 173 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-21 | 93 | 174 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 6.40E-43 | 178 | 281 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.07E-42 | 180 | 295 | No hit | No description |
SMART | SM01138 | 6.1E-69 | 180 | 336 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 3.7E-42 | 181 | 295 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGTQPQQTFW EEEDEEMQGR GTTISGQSMS TSRSLGSPSS RSEQTMATPA SDSTFLRLNH 60 LDIHGDDAGS QGAVASKKKK RGQRAIGGDK SGRGLRQFSM KVCEKVESKG RTTYNEVADE 120 LVAEFADPIN GVSTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSLS 180 DMEELKSERL GLRNRIEKKA AYLQELEEQY IGLQKLIQRN EQLYSSGNAP NGGVSLPFIL 240 VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKLCEGSHND NTTDNPTDGG 300 EGSSIYAQVP TSVSNPPNRP PSSPPLPGIL KARVKNEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-38 | 84 | 178 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27495 | 0.0 | cotyledon| flower| leaf| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G228100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093795 | 0.0 | BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517526.1 | 0.0 | transcription factor-like protein DPB | ||||
Refseq | XP_028248476.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-159 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A445M702 | 0.0 | A0A445M702_GLYSO; Transcription factor-like protein DPB isoform A | ||||
TrEMBL | I1JAG8 | 0.0 | I1JAG8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G43800.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 | Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-152 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G228100.1.p |
Entrez Gene | 100781272 |