PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G221500.4.p
Common NameGLYMA_01G221500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 608aa    MW: 67791.3 Da    PI: 6.8278
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G221500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.9e-083844211954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA+++gL+  qV++WF N R +
  Glyma.01G221500.4.p 384 FEHflHPYPSDVDKHILARQTGLSRGQVSNWFINARVR 421
                          554459******************************88 PP
2BELL117.56.2e-38246316272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          + elqk+k+kLls+leeVd+rYk+y++q++ v+ssFeavag g+a++Y +lAlka+SrhFrcLkd i+ qi
  Glyma.01G221500.4.p 246 FVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMAQI 316
                          679******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-55182314IPR006563POX domain
PfamPF075269.9E-46188312IPR006563POX domain
PROSITE profilePS5007111.758362425IPR001356Homeobox domain
CDDcd000866.70E-11365426No hitNo description
SMARTSM003891.4E-8365429IPR001356Homeobox domain
SuperFamilySSF466891.03E-16366432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-27368431IPR009057Homeodomain-like
PfamPF059204.0E-17382421IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MYNLTTGMEM IGFPKSDTNA VMWRSFIPKP GPSSSKTIND NSTTFYHHDY NNKHADFTPA  60
GNISQTSADN LIVGSHDSAS WQDNINNNNN SSRFDDSSLR CVFPCETNER PSQGLSLSLS  120
STNPSSIGLQ SFELRQTGQH LDFVSSSSRD GFFGKPVSLQ QQQMVSQDGY VSSNSKVASV  180
YQQGHFLVKN SKFLVPAQDL LNEFCSLDAK QSDLGKPTKS LNKKQWEEEN NGIGSSKKHS  240
LTSLEFVELQ KRKTKLLSML EEVDRRYKHY RNQMKSVVSS FEAVAGNGAA TVYSALALKA  300
MSRHFRCLKD GIMAQIQATR KAMGEKDPVA PGTTRGETPR LKVIDQTLRQ QRAFQQMSMM  360
ETHPWRPQRG LPERAVSVLR AWLFEHFLHP YPSDVDKHIL ARQTGLSRGQ VSNWFINARV  420
RLWKPMVEEM YLEEVKDPEN NIASSEGATD QDNDINPNNV EYPPPPSSSR SEDQKPSLVR  480
IDSECASSII NNHSTPDNKN DPKGHEQCFG SVELDFSSYT HHSSGIVSYG SNDQNGNNNQ  540
SGVSLTLGLQ QHGVSLAFPP ATQSSLYYPR DQIEDCQPVQ YSLFDGEGQN LPYRNLMGAQ  600
LLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15371429563Homeobox protein Meis2
3k2a_B1e-15371429563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.397110.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G221500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517476.10.0homeobox protein BEL1 homolog
RefseqXP_006573786.10.0homeobox protein BEL1 homolog
RefseqXP_014632543.10.0homeobox protein BEL1 homolog
RefseqXP_028247538.10.0homeobox protein BEL1 homolog
RefseqXP_028247545.10.0homeobox protein BEL1 homolog
RefseqXP_028247553.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-140BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0R0LEJ50.0A0A0R0LEJ5_SOYBN; Uncharacterized protein
TrEMBLA0A445M7B10.0A0A445M7B1_GLYSO; Homeobox protein BEL1-like isoform A
TrEMBLI1JA880.0I1JA88_SOYBN; Uncharacterized protein
STRINGGLYMA01G43040.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-134TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]