PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 184aa MW: 19941.5 Da PI: 6.0033

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G216200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.9	3e-14	15	62	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++G+r + +Wv+eIr+p+ + r++lg+f t+e+Aa+a++ a+++l+g Glyma.01G216200.1.p 15 FHGIRCRG--RKWVSEIREPR----KaSRIWLGTFPTPEMAAAAYDVAALALKG 62 78998655..59*****94....36*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	17.174	1	70	IPR001471	AP2/ERF domain
SMART	SM00380	8.9E-23	14	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.8E-23	15	71	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-7	15	62	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.47E-16	16	72	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAPSSSPSSK RHPLFHGIRC RGRKWVSEIR EPRKASRIWL GTFPTPEMAA AAYDVAALAL 60 KGDGAVLNLP HSVSKYQMPL TNSPADIRSA ASAAAAMIKA ETETEATHNH NMNIASITDN 120 EATYTASTSW FETDFIDEEV IFGMPSLLVD MAGGMLLSPP RMSPPPSDNS LEKQNGETLW 180 SYF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G216200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	3e-88	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006573759.1	1e-134	ethylene-responsive transcription factor ERF027
Refseq	XP_028224193.1	1e-134	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	1e-42	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A445M6T2	1e-132	A0A445M6T2_GLYSO; Ethylene-responsive transcription factor ERF025
TrEMBL	I1JA36	1e-132	I1JA36_SOYBN; Uncharacterized protein
STRING	GLYMA01G42510.1	1e-133	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	4e-31	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G216200.1.p
Entrez Gene	100811020

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]