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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G214800.1.p | ||||||||
Common Name | GLYMA_01G214800, LOC100808872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 282aa MW: 32145.4 Da PI: 6.9309 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.3e-08 | 230 | 263 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Glyma.01G214800.1.p 230 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 263 469*****************************87 PP | |||||||
2 | ELK | 25.6 | 2.9e-09 | 184 | 205 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Glyma.01G214800.1.p 184 ELKIELKQGFKSRIEDVREEIL 205 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.1E-19 | 18 | 62 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.7E-17 | 20 | 61 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.9E-23 | 73 | 128 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.3E-17 | 76 | 127 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 184 | 204 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 204 | 267 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.87E-16 | 206 | 271 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.3E-11 | 206 | 271 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.73E-12 | 207 | 268 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 211 | 269 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.9E-18 | 224 | 263 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MQEPSLGLMG EVSGDHHRQL KAEITTHPLY EQLLAAHVAC LRVATPIDQL PLIDAQLSQS 60 HHLLRSYVSH NTHSLSPHHR QELDNFLAQY LIVLCTFKEQ LQQHVRVHAV EAVMACRDIE 120 NALQALTGVS LGEGTGATMS DDEDDLQMDI SLDQSSAEGH DMMGFGPLLP TESERSLMER 180 VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSV LKNWWQQHAK WPYPTEDDKA 240 KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 207 | 263 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 280 | RKRNWHSNSQSVTSLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.57758 | 0.0 | cotyledon |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G214800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095003 | 0.0 | BT095003.1 Soybean clone JCVI-FLGm-6F23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573753.1 | 0.0 | homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-168 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | I1JA22 | 0.0 | I1JA22_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G42410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-170 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G214800.1.p |
Entrez Gene | 100808872 |
Publications ? help Back to Top | |||
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