PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G202900.1.p
Common NameGLYMA_01G202900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 317aa    MW: 36201.4 Da    PI: 6.6929
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G202900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.43.1e-10931473790
                 FAR1  37 kegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          k+g+re++  + ++++r++++etr++Ckak++v+ + + +w +t++   H+Hel 
  Glyma.01G202900.1.p  93 KKGRREDRGLTsETRKREPKKETRCDCKAKFRVHVDLHCQWSITEFTDLHSHELL 147
                          456666665555778899***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-893147IPR004330FAR1 DNA binding domain
PfamPF105516.0E-32191282IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGENDESGGE DGEHTDPLSS MDGVGEEGDL FGGGGSGNEE HGKIIINALI DIVDIVMKNL  60
EADVVKRLDF GDLEAAYEFY YWYARINGFC IRKKGRREDR GLTSETRKRE PKKETRCDCK  120
AKFRVHVDLH CQWSITEFTD LHSHELLEDS LCSMLPAHRR MTVADILLIE NFRKVGIRPP  180
PILGAFANSS AFDATYRKNK YMFPFVIFLG VNHHNQTIVF ATSLVSNETE QTYVWLLEQF  240
KDVMKGKEPF SLITDGDLVI RNSIRRVFPR AHHRLCAWHL LWNANSHVCN PAMMNYLKNC  300
LLIMMYPNLK NYGCIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G202900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622126.21e-77protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0R0LEB60.0A0A0R0LEB6_SOYBN; Uncharacterized protein
TrEMBLA0A445M5P00.0A0A445M5P0_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRINGGLYMA01G41133.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-26FAR1-related sequence 5