PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G198100.2.p
Common NameGLYMA_01G198100, LOC100816551
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 366aa    MW: 40843.9 Da    PI: 5.9834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G198100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12190236455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Glyma.01G198100.2.p 190 DHIIAERKRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKELQ 236
                          5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15190247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.74E-11191237No hitNo description
PfamPF000102.7E-9191236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15191246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MENNNTSMDA SEASWLSDLE TEDGCNLFRQ CHLETLLDDD EELLSHEIAS AFENLQQPLS  60
SESNTSYSEA PMNSFTEETS FEKPIKQPKT NASSWNSSFT KHFSLSSSPS SPTSKILSFE  120
NSNSSPPNPN NTDQFHGIVV SSALSPKQIK TKGASVSLPH TRKRLSENQN FEAESPKGHR  180
SYKSPSHVRD HIIAERKRRE KLSQSLIALA ALIPGLKKMD KASVLGDAIK YVKELQERMR  240
MLEEEDKNRD VESVVMVKKQ RLSCCDDGSA SHEDEENSER LPRVEARVLE KDVLLRIHCQ  300
KQKGLLLNIL VEIQNLHLFV VNSSVLPFGD SVLDITIVAQ MGTGYNLTIN DLVKNLRVAT  360
LKSMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
2195200RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.448930.0leaf| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G198100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573687.10.0transcription factor bHLH18 isoform X2
TrEMBLK7K4T50.0K7K4T5_SOYBN; Uncharacterized protein
STRINGGLYMA01G40620.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-45bHLH family protein