PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G198100.1.p
Common NameGLYMA_01G198100, LOC100816551
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 369aa    MW: 41198.4 Da    PI: 5.9834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G198100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.6e-12193239455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Glyma.01G198100.1.p 193 DHIIAERKRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKELQ 239
                          5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-15188249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.275189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15193250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10194240No hitNo description
PfamPF000102.8E-9194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MENNNTSMDA SEASWLSDLL LQETEDGCNL FRQCHLETLL DDDEELLSHE IASAFENLQQ  60
PLSSESNTSY SEAPMNSFTE ETSFEKPIKQ PKTNASSWNS SFTKHFSLSS SPSSPTSKIL  120
SFENSNSSPP NPNNTDQFHG IVVSSALSPK QIKTKGASVS LPHTRKRLSE NQNFEAESPK  180
GHRSYKSPSH VRDHIIAERK RREKLSQSLI ALAALIPGLK KMDKASVLGD AIKYVKELQE  240
RMRMLEEEDK NRDVESVVMV KKQRLSCCDD GSASHEDEEN SERLPRVEAR VLEKDVLLRI  300
HCQKQKGLLL NILVEIQNLH LFVVNSSVLP FGDSVLDITI VAQMGTGYNL TINDLVKNLR  360
VATLKSMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
2198203RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.448930.0leaf| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G198100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573686.10.0transcription factor bHLH18 isoform X1
TrEMBLK7K4T40.0K7K4T4_SOYBN; Uncharacterized protein
STRINGGLYMA01G40620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-45bHLH family protein