PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G197900.2.p
Common NameGLYMA_01G197900, LOC100815491
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 341aa    MW: 38142.6 Da    PI: 5.5878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G197900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13169216355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR++i ++f  L  +lP +     kK++Ka++L  Av+Y+k+Lq
  Glyma.01G197900.2.p 169 QEHIIAERKRRENISKRFIALSAILPGL-----KKMDKASVLGDAVKYVKQLQ 216
                          6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.313166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-11169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-16170229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-13171220No hitNo description
SMARTSM003537.4E-15172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEIAYNYYLP ELEIEDPTFF DQYQMDSFAC PLDDFDFESF SGSPESNSSY HFNSESTPNC  60
FPAESHDQSF TPARPTKRLK NTCASDFISH KVSAFSSSQL ISFGHFNAPS PSHASQQFQN  120
LDFDEKASSE NMDFAAFVSQ GSYEDKSFLS SDNRTNQVGI TTRNPIQAQE HIIAERKRRE  180
NISKRFIALS AILPGLKKMD KASVLGDAVK YVKQLQERVQ TLEEQAAKRT LGSGVLVKRS  240
IIFADDETSD SHCEHSLPEV EVRVSGKDVL IRTQCDKHSG HAAMILSELE KLYFIVQSSS  300
FLPFGNSKTD VTIIAQMNKE NCMTAKDLLG RLRQALVGHN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G197900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631889.10.0transcription factor bHLH18 isoform X4
TrEMBLK7K4T20.0K7K4T2_SOYBN; Uncharacterized protein
STRINGGLYMA01G40600.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-57bHLH family protein