PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 31863.2 Da PI: 8.3237

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G196600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	138	192	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Glyma.01G196600.1.p 138 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARRLNLRPRQVEVWFQNRRARTK 192 788899***********************************************98 PP
2	HD-ZIP_I/II	123.4	1.1e-39	138	227	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++lk+en+rL+ke +eL+ + Glyma.01G196600.1.p 138 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLKDENRRLKKELQELK-A 226 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.01G196600.1.p 227 L 227 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-18	129	195	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	134	194	IPR001356	Homeobox domain
SMART	SM00389	2.6E-15	136	198	IPR001356	Homeobox domain
CDD	cd00086	1.26E-16	138	195	No hit	No description
Pfam	PF00046	6.1E-16	138	192	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-17	138	192	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	169	192	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.4E-10	194	228	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.4E-23	194	237	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGLDQDANSS GLHLVLGLSL TATVKETTQS TKPDDDHHLC VIKPTPTKPY PPNEPSLTLG 60 LSGESYHVTK QVLRNNVYCE DPLELSRQTS PHSVVSSFST GRVVKRERDL SCEDIEVEAE 120 ERVSSRVSDE DEDGTNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA RRLNLRPRQV 180 EVWFQNRRAR TKLKQTEVDC EFLKKCCETL KDENRRLKKE LQELKALKLA QPLYMPMPAA 240 TLTMCPSCDR LGGVNDNGSN KSPFSMAPKP HFYNPFANPS AAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	194	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.15184	0.0	leaf\| meristem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G196600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT099229	0.0	BT099229.1 Soybean clone JCVI-FLGm-13J3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003517364.1	0.0	homeobox-leucine zipper protein HAT22
Refseq	XP_028244902.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	3e-96	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A445M5D2	0.0	A0A445M5D2_GLYSO; Homeobox-leucine zipper protein HAT22
TrEMBL	I1J9H4	0.0	I1J9H4_SOYBN; Uncharacterized protein
STRING	GLYMA01G40450.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107
Representative plant	OGRP196	16	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-78	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G196600.1.p
Entrez Gene	100784129

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]