PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G186700.1.p | ||||||||
Common Name | GLYMA_01G186700, LOC100796649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28293.6 Da PI: 9.7621 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.6e-08 | 154 | 194 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Glyma.01G186700.1.p 154 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 194 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-14 | 146 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 149 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-14 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-6 | 155 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.15E-6 | 168 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDVDKLKTST SDSSMDMMMM MMQMEKFPEF CEPFYNNNTT TTTTTTLLYP ENEYFLNSTT 60 TTLPVFPNVN NPNVITPPPT TLINPPPPSS NFVLQQPMTP HLEPNPEKKN SVAAMREMIF 120 RVAVMQPVHI DPESIKPPKR RNVKISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT 180 ASMLDEAIHY VKFLKKQVQT LEQAGATRPL NVVGFPTTVS NANNNVNYSS FVKSCQPYPM 240 LGSSASKQLL S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29112 | 0.0 | cotyledon| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. | |||||
Uniprot | TISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G186700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097711 | 0.0 | BT097711.1 Soybean clone JCVI-FLGm-22O4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517303.1 | 0.0 | transcription factor HEC2 | ||||
Refseq | XP_028224068.1 | 0.0 | transcription factor HEC2-like | ||||
Swissprot | Q9FHA7 | 8e-52 | HEC1_ARATH; Transcription factor HEC1 | ||||
TrEMBL | A0A445M526 | 0.0 | A0A445M526_GLYSO; Transcription factor HEC1 | ||||
TrEMBL | K7K4L8 | 0.0 | K7K4L8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G39360.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 3e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G186700.1.p |
Entrez Gene | 100796649 |