PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G185800.1.p
Common NameGLYMA_01G185800, HSF
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 283aa    MW: 31193.8 Da    PI: 9.2279
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G185800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.91.4e-37101012102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+ ++++isw e+gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k
  Glyma.01G185800.1.p  10 FLTKTYQLVEDQGTDQVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANEHFKRGQK 90 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell++ikr+k+
  Glyma.01G185800.1.p  91 ELLSEIKRRKT 101
                          *********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.3E-39799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYQLVED QGTDQVISWG ESGNTFVVWK HADFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANEHFKRGQK ELLSEIKRRK TVPQSSAHPP EAGKSGGDGN  120
SPLNSGSDDA GSTSTSSSSS GSKNQGSVET NTTPSHQLSS ENEKLKKDNE TLSCELARAR  180
KQCDELVAFL RDRLMVGPDQ IDRIMRQGSC GSENVVGEGG GGDCLKLFGV WLKGDTLTDK  240
RNNHKRGRED QMGFGGPRLK ESKPVVDFGA VNIMMKSNRV CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-28510125131Heat shock factor protein 1
5d5v_B3e-28510125131Heat shock factor protein 1
5d5v_D3e-28510125131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.288160.0cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G185800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963040.0JN896304.1 Glycine max heat shock transcription factor HSFB1 mRNA, complete cds.
GenBankZ469530.0Z46953.1 G.max mRNA for heat shock transcription factor 34.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241597.10.0heat stress transcription factor 1
SwissprotP223351e-91HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLQ434570.0Q43457_SOYBN; Heat shock transcription factor 34
STRINGGLYMA01G39260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-79heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Czarnecka-Verner E,Yuan CX,Fox PC,Gurley WB
    Isolation and characterization of six heat shock transcription factor cDNA clones from soybean.
    Plant Mol. Biol., 1995. 29(1): p. 37-51
    [PMID:7579166]