PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G179900.1.p
Common NameGLYMA_01G179900, LOC100786231
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 711aa    MW: 77142.8 Da    PI: 7.2667
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G179900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094765131954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Glyma.01G179900.1.p 476 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 513
                          664559******************************88 PP
2BELL120.38.6e-39335406172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLk+ai+ q+
  Glyma.01G179900.1.p 335 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAITAQL 406
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.2E-79266404IPR006563POX domain
PfamPF075262.0E-51271403IPR006563POX domain
PROSITE profilePS5007112.568454517IPR001356Homeobox domain
CDDcd000863.58E-12457518No hitNo description
SMARTSM003891.2E-9457521IPR001356Homeobox domain
SuperFamilySSF466893.38E-17458524IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-29460523IPR009057Homeodomain-like
PfamPF059203.5E-18474513IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MSQDFQQGIF SFPNGLERGR VMSPQQQIRR DKVRFEAAPL VGIEEEEPVY ETAGMLSEMF  60
NFPPATELLE QQHATATFRA ARQAGEWYGN RQQQQQQISG INADSAAAMQ LFLMNPQTRS  120
PSPPQSHTTP SSTLHMLLPN PSSNSLQGFT GSAAGGSFGQ FTWVPEGAHQ QGGVVEGQGL  180
SLSLSSSLEA AKAEELRMGD SGFLYYNHQQ GGGGGGGGGG PSSSSSAVQF QYKNNNSHHH  240
QALHLQGAMG HDNNHQGHVG FGSSSLGVVN VLRNSKYVKA AQELLEEFCS VGRGQFKKSK  300
FNRQNSNPNS NPGGGGSSPS SKDAPPPPPP LSAADRIEHQ RRKVKLLSML DEVDRRYNHY  360
CEQMQMVVNS FDLMMGFGAA VPYTALAQKA MSRHFRCLKE AITAQLKQSC EVLGDKDGAG  420
SSGGLTKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL  480
HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQELKEA ESAEEREKDQ  540
SNNISGNQAQ IPTTPSAATT STATATAPPP PPSTTTKTTK PTGKRSDTIN APESDPSQHL  600
AMNNRQGFSE NQAKKSTAST TTTTIASEVA PPVSQCFDDS DLPAHRLMAS DDTCHLVTAD  660
FGTASASADI GSTLIRFGTT PGDVSLTLGL RHAGNMPEKS PFSVRDFGAI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16463521563Homeobox protein Meis2
3k2a_B2e-16463521563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.19470.0cotyledon| flower| leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G179900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631522.10.0BEL1-like homeodomain protein 4
RefseqXP_014631523.10.0BEL1-like homeodomain protein 4
RefseqXP_028242769.10.0BEL1-like homeodomain protein 4
RefseqXP_028242779.10.0BEL1-like homeodomain protein 4
RefseqXP_028242785.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A445M4R70.0A0A445M4R7_GLYSO; BEL1-like homeodomain protein 2 isoform A
TrEMBLI1J9070.0I1J907_SOYBN; Uncharacterized protein
STRINGGLYMA01G38650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-141BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]