PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G174200.1.p
Common NameGLYMA_01G174200, LOC100799830
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 318aa    MW: 35601.6 Da    PI: 8.4035
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G174200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.63.1e-33104159359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          ++rY+eCl+NhAas+G+h+vDGCgEfm+s geegt+++l+CaAC+CHRnFHR+eve 
  Glyma.01G174200.1.p 104 SIRYRECLRNHAASMGSHVVDGCGEFMAS-GEEGTPESLRCAACECHRNFHRKEVEG 159
                          689*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-30105157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-20106159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.0E-30106157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.346107156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-26242311IPR009057Homeodomain-like
SuperFamilySSF466897.57E-17245309IPR009057Homeodomain-like
TIGRFAMsTIGR015658.4E-25251308IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAMRGQQDKE IEIPTTTTLG YNLLPNRDSS SSSSKLSSPT VGERSSSDHD HQTHTLIFNE  60
TPHHNLYPPP PSLAPPQPQR PTLDPDLSTP IAPTSNPPRT STPSIRYREC LRNHAASMGS  120
HVVDGCGEFM ASGEEGTPES LRCAACECHR NFHRKEVEGE LQPQSLPQQH VPNYHSYYTN  180
KHNGHFHYPT PSSSSLHHRL VATTTATPSL VPPVMMAFGG PAESSSEDLI NNTGAQLSVQ  240
QQAPLTHSSN KKRFRTKFSQ HQKDRMMEFA DKIDWKIQKH NEQEVQHFCT QVGVKRQVFK  300
VWMHNNKQTS SSKKQQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-202523121878ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.190570.0meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G174200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958110.0BT095811.1 Soybean clone JCVI-FLGm-19N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517228.10.0zinc-finger homeodomain protein 6
SwissprotQ9ZPW73e-62ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A0R0LCA20.0A0A0R0LCA2_SOYBN; Uncharacterized protein
STRINGGLYMA01G37993.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.17e-62homeobox protein 24