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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G143800.1.p | ||||||||
Common Name | GLYMA_01G143800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21559.7 Da PI: 8.3054 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.1 | 8.3e-40 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg++++lqqq+++ Glyma.01G143800.1.p 16 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMN 105 7***********************9989************************************************************** PP DUF260 90 lkaelallkee 100 l+ael +++++ Glyma.01G143800.1.p 106 LQAELTYVQAR 116 ******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.48 | 15 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-39 | 16 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDCGGNKIGG SDRGGPCGAC KFLRRKCVKG CIFAPYFDSD QGTAHFAAVH KVFGASNASK 60 LLMRIPAHKR LDAVVTLCYE ALARARDPVY GCVGHLFALQ QQVMNLQAEL TYVQARLATM 120 QRLPMQVAPL PHPQSSSPPP TFHSSDHLAS NADLQSAPMM HFDPLQPHSA SLELSSVVFN 180 QSDQQLEVGN SKFWHGNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-37 | 14 | 117 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-37 | 14 | 117 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21697 | 1e-166 | cotyledon| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G143800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235410 | 1e-138 | AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028238646.1 | 1e-137 | LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 4e-63 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 4e-63 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | K7K3V1 | 1e-145 | K7K3V1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G34523.1 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-65 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G143800.1.p |